Ss1.1-Pig4-TMW8041O12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGGACGTGGCGAATGTGTATGGTGATGTAGAAGTGGATCGCAATAAACACATTCATAA AAAGAGGAAACTAGCCGAGGGAAGAGAGAAAACCATGAGTTCGGACGATGAAGACTGTTC GACAAAAGGAAGGAATCGTCACATTGTTGTCAATAAGGCAGAACTTGCTAACTCGATCGA GGTGTTAGAAAGCTTTAAGCTGGCCAGGGAGAGCTGGGAGCTGCTCTGTTCCCTAGAGTT CCTTGACAAGGAATTTACGAGAATTTGTTTGGCGTGGAAGACAGATACTTGGCTTTGGCT GCGAATCTTCCTCAATGACGTGATCATCTATCAGGGTCAATATAAGAAGGCCATAGCCAG CCTGCACCACTTGGCAGCTCTCCAGGGATCACTTCCTCAGCCACCGATCTCAGGACAGGG GACCTTGGAGCATCAGAGGGCGCTCATCCAGCTGGCCACCTGCCACTTTGCTTTGGGGGA GTACAGAATGACATGTGAGAAGGTCCTTGATTTGATGTGCTACATGGTCCTCCCCATCCA GGACGGAGGCAAATCACAGGAGGAACCATCAAAGATAAAGCCCAAGTTCAGAAAAGGTTC AGACCTGAAGCTTCTGCCCTGTACCAGCAAGGCTATCCTGCCCTACTGTCTGCACTTAAT GTTAGCCTGTTTTAAGCTGCGGGCGTTCACGGACAGCAGGGACGACATGGCGCTGGGGCA TGTCATCGTTCTGCTGCAGCAGGAGTGGCCACGGGGAGAGGCCCTGTTCTTGAAAGCTGT CAACAAGATTTGCCAACAAGGAAATTTCCAATATGAGAATTTTTTCAATTATGTTACAAA TATCGACATGCTGGAGGAATTCGCCTACCTGAGAACTCAGGAAGGTGGGAAGGTTCATCT GGAGTTGCTCCCCAATCAAGGCATGCTGATCAAGCACCACACGGTCACCCGGGGTATCAC CAAGGGCGTGAAGGAGGACTTCCGCCTGGCCATGGAGCGCCAGGTGTCGCGCTGTGGGGA GAACTTGATGCTGGTGCTGCACAGGTTCTGCGTCAACGAGAAGATCCTGCTGCTCCAGAC TCTGGCCTGAGCGGCCCGCCCTCCCGCCCTTCAGAAGCGGACCGCCTGAGCTTTCACGCC CTGGTTGCTTAGAAGTAGTTCCCCAGAGTCTGAGAAGCCATTTCTATTTTTGTCATGTTT TGTAATTTTTGTAAAACAAAAGTTCCTGTTTTGTAAATAAAATCATCCTAAATTTGGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGGACGTGGCGAATGTGTATGGTGATGTAGAAGTGGATCGCAATAAACACATTCATAA AAAGAGGAAACTAGCCGAGGGAAGAGAGAAAACCATGAGTTCGGACGATGAAGACTGTTC GACAAAAGGAAGGAATCGTCACATTGTTGTCAATAAGGCAGAACTTGCTAACTCGATCGA GGTGTTAGAAAGCTTTAAGCTGGCCAGGGAGAGCTGGGAGCTGCTCTGTTCCCTAGAGTT CCTTGACAAGGAATTTACGAGAATTTGTTTGGCGTGGAAGACAGATACTTGGCTTTGGCT GCGAATCTTCCTCAATGACGTGATCATCTATCAGGGTCAATATAAGAAGGCCATAGCCAG CCTGCACCACTTGGCAGCTCTCCAGGGATCACTTCCTCAGCCACCGATCTCAGGACAGGG GACCTTGGAGCATCAGAGGGCGCTCATCCAGCTGGCCACCTGCCACTTTGCTTTGGGGGA GTACAGAATGACATGTGAGAAGGTCCTTGATTTGATGTGCTACATGGTCCTCCCCATCCA GGACGGAGGCAAATCACAGGAGGAACCATCAAAGATAAAGCCCAAGTTCAGAAAAGGTTC AGACCTGAAGCTTCTGCCCTGTACCAGCAAGGCTATCCTGCCCTACTGTCTGCACTTAAT GTTAGCCTGTTTTAAGCTGCGGGCGTTCACGGACAGCAGGGACGACATGGCGCTGGGGCA TGTCATCGTTCTGCTGCAGCAGGAGTGGCCACGGGGAGAGGCCCTGTTCTTGAAAGCTGT CAACAAGATTTGCCAACAAGGAAATTTCCAATATGAGAATTTTTTCAATTATGTTACAAA TATCGACATGCTGGAGGAATTCGCCTACCTGAGAACTCAGGAAGGTGGGAAGGTTCATCT GGAGTTGCTCCCCAATCAAGGCATGCTGATCAAGCACCACACGGTCACCCGGGGTATCAC CAAGGGCGTGAAGGAGGACTTCCGCCTGGCCATGGAGCGCCAGGTGTCGCGCTGTGGGGA GAACTTGATGCTGGTGCTGCACAGGTTCTGCGTCAACGAGAAGATCCTGCTGCTCCAGAC TCTGGCCTGAGCGGCCCGCCCTCCCGCCCTTCAGAAGCGGACCGCCTGAGCTTTCACGCC CTGGTTGCTTAGAAGTAGTTCCCCAGAGTCTGAGAAGCCATTTCTATTTTTGTCATGTTT TGTAATTTTTGTAAAACAAAAGTTCCTGTTTTGTAAATAAAATCATCCTAAATTTGGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 162-251, - strand, RNAz p=0.840297 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 162-251, - strand, RNAz p=0.840297 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 97-251, gnl|bosTau2|chr27 (24279308-24279154) | |
| 97-251, gnl|canFam2|chr16 (25574016-25574205) | |
| 97-251, gnl|danRer3|chrNA (168597805-168597621) | |
| 97-251, gnl|dasNov1|scaffold_41934 (7274-7463) | |
| 97-251, gnl|echTel1|scaffold_321995 (3429-3605) | |
| 97-251, gnl|fr1|chrUn (52048000-52048172) | |
| 97-251, gnl|galGal2|chr4 (34613236-34613403) | |
| 97-251, gnl|hg17|chr8 (19732186-19732373) | |
| 97-251, gnl|Hg17|chr8 (19732196-19732350) | |
| 97-251, gnl|loxAfr1|scaffold_10574 (30749-30934) | |
| 97-251, gnl|mm7|chr8 (67265326-67265512) | |
| 97-251, gnl|Mm7|chr8 (67265336-67265490) | |
| 97-251, gnl|monDom2|scaffold_1 (78738958-78739146) | |
| 97-251, gnl|oryCun1|scaffold_127181 (24301-24488) | |
| 97-251, gnl|panTro1|chr7_random (17177481-17177294) | |
| 97-251, gnl|rheMac2|chr8 (19744415-19744602) | |
| 97-251, gnl|rn3|chr16 (21922901-21922714) | |
| 97-251, gnl|tetNig1|chr1 (316502-316341) | |
| 97-251, gnl|xenTro1|scaffold_267 (808877-808709) | |
| 331-491, gnl|bosTau2|chr27 (24276714-24276554) | |
| 331-491, gnl|canFam2|chr16 (25576485-25576684) | |
| 331-491, gnl|danRer3|chrNA (168596502-168596304) | |
| 331-491, gnl|dasNov1|scaffold_41934 (9751-9929) | |
| 331-491, gnl|echTel1|scaffold_321995 (4642-4832) | |
| 331-491, gnl|fr1|chrUn (52048829-52049030) | |
| 331-491, gnl|galGal2|chr4 (34614832-34615019) | |
| 331-491, gnl|hg17|chr8 (19734937-19735135) | |
| 331-491, gnl|Hg17|chr8 (19734956-19735116) | |
| 331-491, gnl|loxAfr1|scaffold_10574 (32273-32472) | |
| 331-491, gnl|mm7|chr8 (67268309-67268492) | |
| 331-491, gnl|Mm7|chr8 (67268320-67268480) | |
| 331-491, gnl|monDom2|scaffold_1 (78744675-78744868) | |
| 331-491, gnl|oryCun1|scaffold_127181 (26454-26629) | |
| 331-491, gnl|panTro1|chr7_random (17174726-17174528) | |
| 331-491, gnl|rheMac2|chr8 (19747154-19747348) | |
| 331-491, gnl|rn3|chr16 (21919976-21919793) | |
| 331-491, gnl|tetNig1|chr1 (315474-315292) | |
| 331-491, gnl|xenTro1|scaffold_267 (806918-806728) | |
| 675-844, gnl|bosTau2|chr27 (24269694-24269525) | |
| 675-844, gnl|Hg17|chr8 (19745865-19746034) | |
| 675-844, gnl|Mm7|chr8 (67275411-67275580) | |
| 931-1241, gnl|bosTau2|chr27 (24263914-24263615) | |
| 931-1241, gnl|Hg17|chr8 (19753437-19753839) | |
| 931-1241, gnl|Mm7|chr8 (67282032-67282388) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 97-251, gnl|bosTau2|chr27 (24279308-24279154) | |
| 97-251, gnl|canFam2|chr16 (25574016-25574205) | |
| 97-251, gnl|danRer3|chrNA (168597805-168597621) | |
| 97-251, gnl|dasNov1|scaffold_41934 (7274-7463) | |
| 97-251, gnl|echTel1|scaffold_321995 (3429-3605) | |
| 97-251, gnl|fr1|chrUn (52048000-52048172) | |
| 97-251, gnl|galGal2|chr4 (34613236-34613403) | |
| 97-251, gnl|hg17|chr8 (19732186-19732373) | |
| 97-251, gnl|Hg17|chr8 (19732196-19732350) | |
| 97-251, gnl|loxAfr1|scaffold_10574 (30749-30934) | |
| 97-251, gnl|mm7|chr8 (67265326-67265512) | |
| 97-251, gnl|Mm7|chr8 (67265336-67265490) | |
| 97-251, gnl|monDom2|scaffold_1 (78738958-78739146) | |
| 97-251, gnl|oryCun1|scaffold_127181 (24301-24488) | |
| 97-251, gnl|panTro1|chr7_random (17177481-17177294) | |
| 97-251, gnl|rheMac2|chr8 (19744415-19744602) | |
| 97-251, gnl|rn3|chr16 (21922901-21922714) | |
| 97-251, gnl|tetNig1|chr1 (316502-316341) | |
| 97-251, gnl|xenTro1|scaffold_267 (808877-808709) | |
| 331-491, gnl|bosTau2|chr27 (24276714-24276554) | |
| 331-491, gnl|canFam2|chr16 (25576485-25576684) | |
| 331-491, gnl|danRer3|chrNA (168596502-168596304) | |
| 331-491, gnl|dasNov1|scaffold_41934 (9751-9929) | |
| 331-491, gnl|echTel1|scaffold_321995 (4642-4832) | |
| 331-491, gnl|fr1|chrUn (52048829-52049030) | |
| 331-491, gnl|galGal2|chr4 (34614832-34615019) | |
| 331-491, gnl|hg17|chr8 (19734937-19735135) | |
| 331-491, gnl|Hg17|chr8 (19734956-19735116) | |
| 331-491, gnl|loxAfr1|scaffold_10574 (32273-32472) | |
| 331-491, gnl|mm7|chr8 (67268309-67268492) | |
| 331-491, gnl|Mm7|chr8 (67268320-67268480) | |
| 331-491, gnl|monDom2|scaffold_1 (78744675-78744868) | |
| 331-491, gnl|oryCun1|scaffold_127181 (26454-26629) | |
| 331-491, gnl|panTro1|chr7_random (17174726-17174528) | |
| 331-491, gnl|rheMac2|chr8 (19747154-19747348) | |
| 331-491, gnl|rn3|chr16 (21919976-21919793) | |
| 331-491, gnl|tetNig1|chr1 (315474-315292) | |
| 331-491, gnl|xenTro1|scaffold_267 (806918-806728) | |
| 675-844, gnl|bosTau2|chr27 (24269694-24269525) | |
| 675-844, gnl|Hg17|chr8 (19745865-19746034) | |
| 675-844, gnl|Mm7|chr8 (67275411-67275580) | |
| 931-1241, gnl|bosTau2|chr27 (24263914-24263615) | |
| 931-1241, gnl|Hg17|chr8 (19753437-19753839) | |
| 931-1241, gnl|Mm7|chr8 (67282032-67282388) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| tes (0.207814) | |
| col (0.195008) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| eli (0.151814) | |
| che (0.136314) | |
| ese (0.126502) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| col (0.195008) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| eli (0.151814) | |
| che (0.136314) | |
| ese (0.126502) | |
| med (0.116252) | |
| cty (0.10408) |