Non-Coding RNA Search

Ss1.1-Pig4-TMW8041O18.3

Sequence:


               
               TTTTTTCTCCCACTTCCTCCTTAATTGGTCAGGGCTCCTGCTTTGCTGGCTCAGCAAGGC
CCTGGGCACTGACCCACCAAGGGGCGCCACCTTCCCCGGGCCTCGGGGCGCTTGGTGGGA
GCAGGGGCCCCGGGGGCCGCGTCAGGCGAAGTAGGCGTAAAAGAAGAGGTTGACACACAC
GAGGAGGACGGCGTTGAGGCTGCAGACCCGGGCCCAGAAGGCGTGTTTCTGGGATGCTGG
GCCGTCACCTGTTTTGGCCCCCGAGGGCCGGTCCCGAGCCAGGGTCCACCACGTGAGGTT
CTCGATCTGGACGCCCGCGGGGGGCGGCGTCAGCAGGCTCACGGCCGCCACCACGGCCCC
GCTGAGGACGAAGAGCGCCACGGCGAAGTGCAGGTAGTGGACCGTGCGGAGCAGGGCCGG
CCGCACGTCGGGGTGGCCGCAGGGCGGGGCGGGGTGCAGGAACTCCAGGACCAGCCTCCA
GGCGCCCACCGCCAGCCCCACCATCAGGCCCCAGAAGGCCCCCTGCTCGTTGGCCCGCCG
CCAGAAGATGCCCAGGACAAAGACCGCGGTCACCGGGGGGGCCAGCGAGCTGGTCACCGA
CTGCATGTAGATGAAGAGCTGCCCGCTGTTGGAGCCTTGCAGGACGGGGATCCAGGCCAC
GCTCACGCCAATGAGCACGACGATGACCAGCCGTCCCACCAGCAGCAGCTCCCGCTCGCC
GGCGCGGGGCCGCAGCCGCCTCCAGACGTCCATGGTGAAGAGGGTGCTGCTGCTGTTAAA
GATGGACGTCAGCGAGGACATGAGCGCGGCCATCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTCTCCCACTTCCTCCTTAATTGGTCAGGGCTCCTGCTTTGCTGGCTCAGCAAGGC
CCTGGGCACTGACCCACCAAGGGGCGCCACCTTCCCCGGGCCTCGGGGCGCTTGGTGGGA
GCAGGGGCCCCGGGGGCCGCGTCAGGCGAAGTAGGCGTAAAAGAAGAGGTTGACACACAC
GAGGAGGACGGCGTTGAGGCTGCAGACCCGGGCCCAGAAGGCGTGTTTCTGGGATGCTGG
GCCGTCACCTGTTTTGGCCCCCGAGGGCCGGTCCCGAGCCAGGGTCCACCACGTGAGGTT
CTCGATCTGGACGCCCGCGGGGGGCGGCGTCAGCAGGCTCACGGCCGCCACCACGGCCCC
GCTGAGGACGAAGAGCGCCACGGCGAAGTGCAGGTAGTGGACCGTGCGGAGCAGGGCCGG
CCGCACGTCGGGGTGGCCGCAGGGCGGGGCGGGGTGCAGGAACTCCAGGACCAGCCTCCA
GGCGCCCACCGCCAGCCCCACCATCAGGCCCCAGAAGGCCCCCTGCTCGTTGGCCCGCCG
CCAGAAGATGCCCAGGACAAAGACCGCGGTCACCGGGGGGGCCAGCGAGCTGGTCACCGA
CTGCATGTAGATGAAGAGCTGCCCGCTGTTGGAGCCTTGCAGGACGGGGATCCAGGCCAC
GCTCACGCCAATGAGCACGACGATGACCAGCCGTCCCACCAGCAGCAGCTCCCGCTCGCC
GGCGCGGGGCCGCAGCCGCCTCCAGACGTCCATGGTGAAGAGGGTGCTGCTGCTGTTAAA
GATGGACGTCAGCGAGGACATGAGCGCGGCCATCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               134-251, - strand, RNAz p=0.553884

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               134-251, - strand, RNAz p=0.553884

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_152351, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_152351, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-251, gnl|bosTau2|chr19 (26816148-26815887)
               

               
               2-251, gnl|Hg17|chr17 (18864655-18864360)
               

               
               2-251, gnl|Mm7|chr11 (61754391-61754672)
               


               
               307-525, gnl|bosTau2|chr19 (26815571-26815353)
               

               
               307-525, gnl|Hg17|chr17 (18863966-18863748)
               

               
               307-525, gnl|Mm7|chr11 (61755084-61755302)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-251, gnl|bosTau2|chr19 (26816148-26815887)
               

               
               2-251, gnl|Hg17|chr17 (18864655-18864360)
               

               
               2-251, gnl|Mm7|chr11 (61754391-61754672)
               


               
               307-525, gnl|bosTau2|chr19 (26815571-26815353)
               

               
               307-525, gnl|Hg17|chr17 (18863966-18863748)
               

               
               307-525, gnl|Mm7|chr11 (61755084-61755302)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lnt (0.142308)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)

	2-251, gnl\|bosTau2\|chr19 (26816148-26815887)
	2-251, gnl\|Hg17\|chr17 (18864655-18864360)
	2-251, gnl\|Mm7\|chr11 (61754391-61754672)

	307-525, gnl\|bosTau2\|chr19 (26815571-26815353)
	307-525, gnl\|Hg17\|chr17 (18863966-18863748)
	307-525, gnl\|Mm7\|chr11 (61755084-61755302)