Ss1.1-Pig4-TMW8041P12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTTCAAAGGCAGAAAGCCACACAACTATAAGATAAGCCTGTGAGGTACACTTTTCTGAA GGAAATTGCTGGGTCTCTTAACCAAAGAATATTCCAGTAACACACACCCTAGTACTGCTT ATAAACCAAAGGAGAAAGAATAATGCATTATATAACATATCCCTTGAAACAGGGAGAGGA GGATCATTCTGTGGAAACAGCATCTTTGGACTCTGCATCAGTTTGTTCCACTTCAGCTCT GGCAGCAGCTTCGGCAGGAGTAGTGACTGTTAAGGTGCTTTCTGACTCTGTAGCCAGGGT TTCCACTTCGCCTATGGCCTCAGCAGCTTTACCTCTGGCCTCTGCTTCAGTGTTGCCCTT CTCAGATGCTACTCCACAGGGTGTCTCTGCTTCCAGCGGCTCTTTGGGGTGGGGGCCACC AGTGTCCTCAGCTGTGTCCACTGGGCCTTCCCCTTCAGCCAGCATGTCACTACTTTCTGG AGTAGGTGCACCTTCCTCATCTACTGCTCTCACTGCTGCTGTAATCACCTCAGCTAAGAC TTCGGCAGCTACTTCCTCAGGTGTCTCTTCCTTATCCTCACCTCCTAAATTGTCATCTCC TATTTCTGGGTCAACAGCTTCACTGGTGAAAGGGTCTTCACCCTTGAGGTATTTTTCCAG CATCTTCACTATGTGTCTGTTGTTCAAAACACTCTTAGCCACATGGAGACTTGTTTTCTT GAACTGTTCAGCAGCCAACCGGCGGTTGTGATTGTGGTCGACAGAGTGCAGGTGCCGCTG GAGGAGCTGGTGCTGTGCAGGGATCAGCATGTCACAAGCCAGGCAGTGAGCAGCCTCTAT CTTCTTGAAGAAGTGCTCCTGGCCAATCCCTTTGAAAGGATCTGGTTTTGGTTTTGTGCT TTCCTTTTCCATCAATTCCTGACGCCTTTTCTCAATTTTCTTATTCCTGTTTACAATGTA TTCCTGGAGGAACTCCACTGTCTTGTCAGGCAGTTTGGTACTTATAAACCGTAGTGTCTC TTTGTGAAATTTGCTTTGCAGATGCTTCTGGATTTCTTCATCTTCAAAGCTACGAAACTT GCACACGGAACAGGCAAACTGAATCCTGTCAGCTGCTCGGTCTCGCATCCTGTCTCTTCT CCTTTGCTTTTCCCTCTTCTTCTTTACTTCATCATCTTCATCATCCTTCTCTCCTCTCTG CTTCCCAGGGTCACTGTCCCACGAAGATGGCGACCGGCGTGCGCTGCTCAGAAGCCTCTC AAAAGGGCGTGTGGGATTTTTGGCAAGAGGTCACTGCCTGAAACTATTACTGCTGTTTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTTCAAAGGCAGAAAGCCACACAACTATAAGATAAGCCTGTGAGGTACACTTTTCTGAA GGAAATTGCTGGGTCTCTTAACCAAAGAATATTCCAGTAACACACACCCTAGTACTGCTT ATAAACCAAAGGAGAAAGAATAATGCATTATATAACATATCCCTTGAAACAGGGAGAGGA GGATCATTCTGTGGAAACAGCATCTTTGGACTCTGCATCAGTTTGTTCCACTTCAGCTCT GGCAGCAGCTTCGGCAGGAGTAGTGACTGTTAAGGTGCTTTCTGACTCTGTAGCCAGGGT TTCCACTTCGCCTATGGCCTCAGCAGCTTTACCTCTGGCCTCTGCTTCAGTGTTGCCCTT CTCAGATGCTACTCCACAGGGTGTCTCTGCTTCCAGCGGCTCTTTGGGGTGGGGGCCACC AGTGTCCTCAGCTGTGTCCACTGGGCCTTCCCCTTCAGCCAGCATGTCACTACTTTCTGG AGTAGGTGCACCTTCCTCATCTACTGCTCTCACTGCTGCTGTAATCACCTCAGCTAAGAC TTCGGCAGCTACTTCCTCAGGTGTCTCTTCCTTATCCTCACCTCCTAAATTGTCATCTCC TATTTCTGGGTCAACAGCTTCACTGGTGAAAGGGTCTTCACCCTTGAGGTATTTTTCCAG CATCTTCACTATGTGTCTGTTGTTCAAAACACTCTTAGCCACATGGAGACTTGTTTTCTT GAACTGTTCAGCAGCCAACCGGCGGTTGTGATTGTGGTCGACAGAGTGCAGGTGCCGCTG GAGGAGCTGGTGCTGTGCAGGGATCAGCATGTCACAAGCCAGGCAGTGAGCAGCCTCTAT CTTCTTGAAGAAGTGCTCCTGGCCAATCCCTTTGAAAGGATCTGGTTTTGGTTTTGTGCT TTCCTTTTCCATCAATTCCTGACGCCTTTTCTCAATTTTCTTATTCCTGTTTACAATGTA TTCCTGGAGGAACTCCACTGTCTTGTCAGGCAGTTTGGTACTTATAAACCGTAGTGTCTC TTTGTGAAATTTGCTTTGCAGATGCTTCTGGATTTCTTCATCTTCAAAGCTACGAAACTT GCACACGGAACAGGCAAACTGAATCCTGTCAGCTGCTCGGTCTCGCATCCTGTCTCTTCT CCTTTGCTTTTCCCTCTTCTTCTTTACTTCATCATCTTCATCATCCTTCTCTCCTCTCTG CTTCCCAGGGTCACTGTCCCACGAAGATGGCGACCGGCGTGCGCTGCTCAGAAGCCTCTC AAAAGGGCGTGTGGGATTTTTGGCAAGAGGTCACTGCCTGAAACTATTACTGCTGTTTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 267-386, + strand, RNAz p=0.963115 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 267-386, + strand, RNAz p=0.963115 |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 7-644, gnl|bosTau2|chr7 (6959017-6958398) | |
| 7-644, gnl|Hg17|chr19 (15326533-15327183) | |
| 7-644, gnl|Mm7|chr17 (30499945-30500555) | |
| 731-890, gnl|bosTau2|chr7 (6955515-6955355) | |
| 731-890, gnl|canFam2|chr20 (49815783-49815678) | |
| 731-890, gnl|canFam2|chr20 (49815635-49815758) | |
| 731-890, gnl|dasNov1|scaffold_39906 (6431-6345) | |
| 731-890, gnl|dasNov1|scaffold_39906 (6302-6425) | |
| 731-890, gnl|echTel1|scaffold_313974 (40571-40465) | |
| 731-890, gnl|echTel1|scaffold_313974 (40422-40545) | |
| 731-890, gnl|hg17|chr19 (15332643-15332749) | |
| 731-890, gnl|Hg17|chr19 (15332651-15332811) | |
| 731-890, gnl|hg17|chr9 (11002979-11003099) | |
| 731-890, gnl|loxAfr1|scaffold_99576 (94-189) | |
| 731-890, gnl|loxAfr1|scaffold_99576 (232-109) | |
| 731-890, gnl|mm7|chr17 (30504247-30504356) | |
| 731-890, gnl|mm7|chr17 (30504397-30504280) | |
| 731-890, gnl|Mm7|chr17 (30504258-30504397) | |
| 731-890, gnl|monDom2|scaffold_100 (1065982-1066087) | |
| 731-890, gnl|monDom2|scaffold_35 (11392352-11392228) | |
| 731-890, gnl|oryCun1|scaffold_87601 (2597-2509) | |
| 731-890, gnl|oryCun1|scaffold_87601 (2459-2584) | |
| 731-890, gnl|panTro1|chr20 (16048322-16048428) | |
| 731-890, gnl|panTro1|chr20 (16048469-16048365) | |
| 731-890, gnl|rheMac2|chr15 (66071063-66070943) | |
| 731-890, gnl|rheMac2|chr19 (14962184-14962289) | |
| 731-890, gnl|rn3|chr7 (12878173-12878279) | |
| 731-890, gnl|rn3|chr7 (12878320-12878203) | |
| 731-890, gnl|tetNig1|chr18 (9168509-9168600) | |
| 963-1108, gnl|bosTau2|chr7 (6954470-6954325) | |
| 963-1108, gnl|canFam2|chr20 (49814847-49814695) | |
| 963-1108, gnl|canFam2|chr20 (49814703-49814801) | |
| 963-1108, gnl|dasNov1|scaffold_39906 (6210-6064) | |
| 963-1108, gnl|dasNov1|scaffold_39906 (6066-6164) | |
| 963-1108, gnl|echTel1|scaffold_313974 (39979-39827) | |
| 963-1108, gnl|echTel1|scaffold_313974 (39835-39933) | |
| 963-1108, gnl|galGal2|chrUn (133431217-133431065) | |
| 963-1108, gnl|hg17|chr19 (15333921-15334073) | |
| 963-1108, gnl|Hg17|chr19 (15333920-15334065) | |
| 963-1108, gnl|hg17|chr9 (11002743-11002841) | |
| 963-1108, gnl|loxAfr1|scaffold_99576 (1033-1185) | |
| 963-1108, gnl|loxAfr1|scaffold_99576 (1177-1079) | |
| 963-1108, gnl|mm7|chr17 (30505800-30505950) | |
| 963-1108, gnl|mm7|chr17 (30505941-30505846) | |
| 963-1108, gnl|Mm7|chr17 (30505799-30505944) | |
| 963-1108, gnl|monDom2|scaffold_100 (1067300-1067450) | |
| 963-1108, gnl|oryCun1|scaffold_87601 (2373-2248) | |
| 963-1108, gnl|oryCun1|scaffold_87601 (2249-2330) | |
| 963-1108, gnl|rheMac2|chr15 (66071299-66071201) | |
| 963-1108, gnl|rheMac2|chr19 (14963719-14963871) | |
| 963-1108, gnl|rn3|chr7 (12879822-12879972) | |
| 963-1108, gnl|rn3|chr7 (12879963-12879868) | |
| 1213-1320, gnl|bosTau2|chr7 (6951531-6951424) | |
| 1213-1320, gnl|canFam2|chr20 (49811882-49811074) | |
| 1213-1320, gnl|dasNov1|scaffold_160671 (2081-1420) | |
| 1213-1320, gnl|echTel1|scaffold_313974 (39207-38520) | |
| 1213-1320, gnl|hg17|chr19 (15340528-15341290) | |
| 1213-1320, gnl|Hg17|chr19 (15340897-15341004) | |
| 1213-1320, gnl|mm7|chr17 (30507580-30508355) | |
| 1213-1320, gnl|Mm7|chr17 (30507971-30508078) | |
| 1213-1320, gnl|monDom2|scaffold_100 (1087534-1088428) | |
| 1213-1320, gnl|oryCun1|scaffold_215274 (48591-47804) | |
| 1213-1320, gnl|panTro1|chr20 (16054765-16055524) | |
| 1213-1320, gnl|rheMac2|chr19 (14967727-14968489) | |
| 1213-1320, gnl|rn3|chr7 (12881332-12882115) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-644, gnl|bosTau2|chr7 (6959017-6958398) | |
| 7-644, gnl|Hg17|chr19 (15326533-15327183) | |
| 7-644, gnl|Mm7|chr17 (30499945-30500555) | |
| 731-890, gnl|bosTau2|chr7 (6955515-6955355) | |
| 731-890, gnl|canFam2|chr20 (49815783-49815678) | |
| 731-890, gnl|canFam2|chr20 (49815635-49815758) | |
| 731-890, gnl|dasNov1|scaffold_39906 (6431-6345) | |
| 731-890, gnl|dasNov1|scaffold_39906 (6302-6425) | |
| 731-890, gnl|echTel1|scaffold_313974 (40571-40465) | |
| 731-890, gnl|echTel1|scaffold_313974 (40422-40545) | |
| 731-890, gnl|hg17|chr19 (15332643-15332749) | |
| 731-890, gnl|Hg17|chr19 (15332651-15332811) | |
| 731-890, gnl|hg17|chr9 (11002979-11003099) | |
| 731-890, gnl|loxAfr1|scaffold_99576 (94-189) | |
| 731-890, gnl|loxAfr1|scaffold_99576 (232-109) | |
| 731-890, gnl|mm7|chr17 (30504247-30504356) | |
| 731-890, gnl|mm7|chr17 (30504397-30504280) | |
| 731-890, gnl|Mm7|chr17 (30504258-30504397) | |
| 731-890, gnl|monDom2|scaffold_100 (1065982-1066087) | |
| 731-890, gnl|monDom2|scaffold_35 (11392352-11392228) | |
| 731-890, gnl|oryCun1|scaffold_87601 (2597-2509) | |
| 731-890, gnl|oryCun1|scaffold_87601 (2459-2584) | |
| 731-890, gnl|panTro1|chr20 (16048322-16048428) | |
| 731-890, gnl|panTro1|chr20 (16048469-16048365) | |
| 731-890, gnl|rheMac2|chr15 (66071063-66070943) | |
| 731-890, gnl|rheMac2|chr19 (14962184-14962289) | |
| 731-890, gnl|rn3|chr7 (12878173-12878279) | |
| 731-890, gnl|rn3|chr7 (12878320-12878203) | |
| 731-890, gnl|tetNig1|chr18 (9168509-9168600) | |
| 963-1108, gnl|bosTau2|chr7 (6954470-6954325) | |
| 963-1108, gnl|canFam2|chr20 (49814847-49814695) | |
| 963-1108, gnl|canFam2|chr20 (49814703-49814801) | |
| 963-1108, gnl|dasNov1|scaffold_39906 (6210-6064) | |
| 963-1108, gnl|dasNov1|scaffold_39906 (6066-6164) | |
| 963-1108, gnl|echTel1|scaffold_313974 (39979-39827) | |
| 963-1108, gnl|echTel1|scaffold_313974 (39835-39933) | |
| 963-1108, gnl|galGal2|chrUn (133431217-133431065) | |
| 963-1108, gnl|hg17|chr19 (15333921-15334073) | |
| 963-1108, gnl|Hg17|chr19 (15333920-15334065) | |
| 963-1108, gnl|hg17|chr9 (11002743-11002841) | |
| 963-1108, gnl|loxAfr1|scaffold_99576 (1033-1185) | |
| 963-1108, gnl|loxAfr1|scaffold_99576 (1177-1079) | |
| 963-1108, gnl|mm7|chr17 (30505800-30505950) | |
| 963-1108, gnl|mm7|chr17 (30505941-30505846) | |
| 963-1108, gnl|Mm7|chr17 (30505799-30505944) | |
| 963-1108, gnl|monDom2|scaffold_100 (1067300-1067450) | |
| 963-1108, gnl|oryCun1|scaffold_87601 (2373-2248) | |
| 963-1108, gnl|oryCun1|scaffold_87601 (2249-2330) | |
| 963-1108, gnl|rheMac2|chr15 (66071299-66071201) | |
| 963-1108, gnl|rheMac2|chr19 (14963719-14963871) | |
| 963-1108, gnl|rn3|chr7 (12879822-12879972) | |
| 963-1108, gnl|rn3|chr7 (12879963-12879868) | |
| 1213-1320, gnl|bosTau2|chr7 (6951531-6951424) | |
| 1213-1320, gnl|canFam2|chr20 (49811882-49811074) | |
| 1213-1320, gnl|dasNov1|scaffold_160671 (2081-1420) | |
| 1213-1320, gnl|echTel1|scaffold_313974 (39207-38520) | |
| 1213-1320, gnl|hg17|chr19 (15340528-15341290) | |
| 1213-1320, gnl|Hg17|chr19 (15340897-15341004) | |
| 1213-1320, gnl|mm7|chr17 (30507580-30508355) | |
| 1213-1320, gnl|Mm7|chr17 (30507971-30508078) | |
| 1213-1320, gnl|monDom2|scaffold_100 (1087534-1088428) | |
| 1213-1320, gnl|oryCun1|scaffold_215274 (48591-47804) | |
| 1213-1320, gnl|panTro1|chr20 (16054765-16055524) | |
| 1213-1320, gnl|rheMac2|chr19 (14967727-14968489) | |
| 1213-1320, gnl|rn3|chr7 (12881332-12882115) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| duo (0.172801) | |
| nje (0.16592) | |
| sug (0.127291) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.172801) | |
| nje (0.16592) | |
| sug (0.127291) | |
| cty (0.10408) |