Ss1.1-Pig4-TMW8042A04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCGGAGGGCGAGAGGTCTGGCCGCGGGACGGTGGGCAGGGAGGGCGCGGGCGTGCGGC GGCCCCTCCGCACCATGTACACCATCACCAAGGGACCCAGCAAGCTGGTCGCGCAGCGCC GCACAGGTCCCACGCAGCAGCAGGTGGAGAACCGGCTCGGCGAGCTCCTGAAATGCCGGC ATCCCGCGCCCCCGACCCCGCAGCCCCCACGGACGCAGCCTCCAGGACCCTGGCCCCTGT CAAGTCCAGGGCCGAGGCTCGTGTTCAATCGGGTGAATGGCCGGCGGCCCCCTGCCACAT CCCCATCCCTCGAGGGATCCCAAGAGACCTACACACTGGCCCACGAGGAGAACGTCCGAT TTGTGTCCGAAGCCTGGCAGCAAGTGGAGCAGCAGCTGGGTGGTGGCCCAGCCGGTGAGA GCGGCCCGAGGCCTGTGCAGTACGTGGAGAGGACCCCCAACCCCCGGCTACAGAACTTTG TGCCCATCGACCTGGATGAGTGGTGGGCACAGCAGTTCCTGGCCAGGATCACCAACTGCT CCTAGCTTCCAAGGAATGCTGCCTAAGCAGGGCCTGGCCCTGCCCCACACTGGACCCTCT GCCAGGAGAGGACCACGGTGCCCTGCTCACCCACTGTGGCAGGCCAGGCTTCACCCTGGC CCTGGCCAGGCGCCGGCCACACCTGAAGTGCCAGCATTTGGACTTTTGCACCTGCTGACC CCTCTGTCCAGCTGTTCCAGGCTGCCAGGGGCTGAAACTATCTGACCTCAGTCCTGCTCA CTGTGCCCTGGGCCAGCCCATGGGGCTGGCAGGGAGGAGCTCCAGGCTAATAAAATTGAG AAAACTGCCAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCGGAGGGCGAGAGGTCTGGCCGCGGGACGGTGGGCAGGGAGGGCGCGGGCGTGCGGC GGCCCCTCCGCACCATGTACACCATCACCAAGGGACCCAGCAAGCTGGTCGCGCAGCGCC GCACAGGTCCCACGCAGCAGCAGGTGGAGAACCGGCTCGGCGAGCTCCTGAAATGCCGGC ATCCCGCGCCCCCGACCCCGCAGCCCCCACGGACGCAGCCTCCAGGACCCTGGCCCCTGT CAAGTCCAGGGCCGAGGCTCGTGTTCAATCGGGTGAATGGCCGGCGGCCCCCTGCCACAT CCCCATCCCTCGAGGGATCCCAAGAGACCTACACACTGGCCCACGAGGAGAACGTCCGAT TTGTGTCCGAAGCCTGGCAGCAAGTGGAGCAGCAGCTGGGTGGTGGCCCAGCCGGTGAGA GCGGCCCGAGGCCTGTGCAGTACGTGGAGAGGACCCCCAACCCCCGGCTACAGAACTTTG TGCCCATCGACCTGGATGAGTGGTGGGCACAGCAGTTCCTGGCCAGGATCACCAACTGCT CCTAGCTTCCAAGGAATGCTGCCTAAGCAGGGCCTGGCCCTGCCCCACACTGGACCCTCT GCCAGGAGAGGACCACGGTGCCCTGCTCACCCACTGTGGCAGGCCAGGCTTCACCCTGGC CCTGGCCAGGCGCCGGCCACACCTGAAGTGCCAGCATTTGGACTTTTGCACCTGCTGACC CCTCTGTCCAGCTGTTCCAGGCTGCCAGGGGCTGAAACTATCTGACCTCAGTCCTGCTCA CTGTGCCCTGGGCCAGCCCATGGGGCTGGCAGGGAGGAGCTCCAGGCTAATAAAATTGAG AAAACTGCCAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 740-840, + strand, RNAz p=0.514919 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 740-840, + strand, RNAz p=0.514919 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_032371, + |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-128, gnl|bosTau2|chr25 (1261693-1261557) | |
| 243-372, gnl|bosTau2|chr25 (1257679-1257550) | |
| 243-372, gnl|canFam2|chr6 (42963945-42964067) | |
| 243-372, gnl|echTel1|scaffold_322245 (328-453) | |
| 243-372, gnl|Hg17|chr16 (637416-637545) | |
| 243-372, gnl|hg17|chrX (130655384-130655511) | |
| 243-372, gnl|loxAfr1|scaffold_79298 (4415-4540) | |
| 243-372, gnl|mm7|chr17 (24047835-24047962) | |
| 243-372, gnl|Mm7|chr17 (24047963-24047834) | |
| 243-372, gnl|oryCun1|scaffold_202003 (11001-10873) | |
| 243-372, gnl|panTro1|chrX (134928228-134928355) | |
| 243-372, gnl|rheMac2|chr20 (638719-638594) | |
| 243-372, gnl|rn3|chr10 (15130082-15130209) | |
| 470-849, gnl|bosTau2|chr25 (1257098-1256705) | |
| 470-849, gnl|canFam2|chr6 (42963385-42963012) | |
| 470-849, gnl|canFam2|chr6 (42963007-42963307) | |
| 470-849, gnl|hg17|chr1 (182136762-182137097) | |
| 470-849, gnl|Hg17|chr16 (638117-638475) | |
| 470-849, gnl|hg17|chrX (130654934-130655209) | |
| 470-849, gnl|loxAfr1|scaffold_120919 (4275-3968) | |
| 470-849, gnl|loxAfr1|scaffold_120919 (3966-4195) | |
| 470-849, gnl|mm7|chr17 (24047285-24046955) | |
| 470-849, gnl|mm7|chr17 (24046939-24047204) | |
| 470-849, gnl|Mm7|chr17 (24047283-24046938) | |
| 470-849, gnl|oryCun1|scaffold_202003 (11087-11402) | |
| 470-849, gnl|oryCun1|scaffold_202003 (11418-11158) | |
| 470-849, gnl|panTro1|chr1 (164705447-164705782) | |
| 470-849, gnl|panTro1|chrX (134927778-134928053) | |
| 470-849, gnl|rheMac2|chr1 (185273250-185272903) | |
| 470-849, gnl|rheMac2|chr20 (639647-639369) | |
| 470-849, gnl|rn3|chr10 (15129546-15129220) | |
| 470-849, gnl|rn3|chr10 (15129200-15129465) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-128, gnl|bosTau2|chr25 (1261693-1261557) | |
| 243-372, gnl|bosTau2|chr25 (1257679-1257550) | |
| 243-372, gnl|canFam2|chr6 (42963945-42964067) | |
| 243-372, gnl|echTel1|scaffold_322245 (328-453) | |
| 243-372, gnl|Hg17|chr16 (637416-637545) | |
| 243-372, gnl|hg17|chrX (130655384-130655511) | |
| 243-372, gnl|loxAfr1|scaffold_79298 (4415-4540) | |
| 243-372, gnl|mm7|chr17 (24047835-24047962) | |
| 243-372, gnl|Mm7|chr17 (24047963-24047834) | |
| 243-372, gnl|oryCun1|scaffold_202003 (11001-10873) | |
| 243-372, gnl|panTro1|chrX (134928228-134928355) | |
| 243-372, gnl|rheMac2|chr20 (638719-638594) | |
| 243-372, gnl|rn3|chr10 (15130082-15130209) | |
| 470-849, gnl|bosTau2|chr25 (1257098-1256705) | |
| 470-849, gnl|canFam2|chr6 (42963385-42963012) | |
| 470-849, gnl|canFam2|chr6 (42963007-42963307) | |
| 470-849, gnl|hg17|chr1 (182136762-182137097) | |
| 470-849, gnl|Hg17|chr16 (638117-638475) | |
| 470-849, gnl|hg17|chrX (130654934-130655209) | |
| 470-849, gnl|loxAfr1|scaffold_120919 (4275-3968) | |
| 470-849, gnl|loxAfr1|scaffold_120919 (3966-4195) | |
| 470-849, gnl|mm7|chr17 (24047285-24046955) | |
| 470-849, gnl|mm7|chr17 (24046939-24047204) | |
| 470-849, gnl|Mm7|chr17 (24047283-24046938) | |
| 470-849, gnl|oryCun1|scaffold_202003 (11087-11402) | |
| 470-849, gnl|oryCun1|scaffold_202003 (11418-11158) | |
| 470-849, gnl|panTro1|chr1 (164705447-164705782) | |
| 470-849, gnl|panTro1|chrX (134927778-134928053) | |
| 470-849, gnl|rheMac2|chr1 (185273250-185272903) | |
| 470-849, gnl|rheMac2|chr20 (639647-639369) | |
| 470-849, gnl|rn3|chr10 (15129546-15129220) | |
| 470-849, gnl|rn3|chr10 (15129200-15129465) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| cov (0.925069) | |
| cst (0.420109) | |
| ill (0.351185) | |
| hlv (0.278513) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| che (0.136314) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.925069) | |
| cst (0.420109) | |
| ill (0.351185) | |
| hlv (0.278513) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| che (0.136314) | |
| cly (0.120642) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |