Non-Coding RNA Search

Ss1.1-Pig4-TMW8042A09.5

Sequence:


               
               GGTTCCTGAAAATCTGCTGGTTTTGTTCTATTCACCTAGAGAACCCTGCCACCCACTTCC
AGCAGTTCAGAAGCCATGATGGGAAATGGGGGAGACTAAGAGAGTCAGCCCTTCTCCAAG
GTCTGGTTATGGAAATCTGATTGTGGTAAAAGGAAGTTCTAAGGCTGTTTGGTAGAATGA
CTGGACCCCTCAAATCTAAGTTCCTGGTTATCATTTTCATTGTTTCCAAAATTTTGCAAG
TATGTGAAAAACCAGTCTTTGGTTTTGACTTGAAAGTGATATTTCGCTATTTAAATTACA
TCTTAATACATGTGAGCTATGTAATGACCTGGGTGAGCTAATTAGTTTTTAATACTTAAT
GGGAGGAAAAAAAACTTAAAAACTTGCCTATCAGTTTCTTTATTACTGTGTTTCCCGAGA
AAGAATTACCAAGCTCCTATTTTTAATTTGCTTTCAACTTTGTTTTGTCATGAACTGTAT
TATAATTTAAATGAGGTCGCTATTTTTGGATGCCTAAAAACCTGGTTTAAATTTAATTTT
TGGTTACATTTCAAGCTCAGTTTAAAAACATACATAAGAGCACAAATAATCTGACCATAT
AAAGAAGTACAGAAATGACCTGACAACCAGGCTCAGTGTACATACACAGCTTCGAGAAGA
GCAAGTGGTTTCAGAAACATAGAGCTGTAATAGAAGGGAAATTAGCATGGTTGAATGCGG
TCCTCATTACTTTGGAACATTTTAAATATTTTCATTCCATATTTTCATATAGAGCTCTAG
CTGCTCTGTAAACCCAAGTACTACAAATTCGCTTTGGCTTGTTTTATTGCTATTGGGTTT
TGTTAAATAAAACTTAGCATCAAGCTACAGGTACCAACACTTCCCTAAGTATTCCATTTT
ATCACTTACTTGCACTTTTTCTGACTTGTTTCTGGGAAAGTCATTTTGTCTTAGCTTGCA
GTTACTTAATTATTTTGTGTTAGAGACTTAAGAGGTTGGCATAGAACTTGGTTGGCTAGC
TTTAGTTATGTAACTAAACTATGCCTCATTAAGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTCCTGAAAATCTGCTGGTTTTGTTCTATTCACCTAGAGAACCCTGCCACCCACTTCC
AGCAGTTCAGAAGCCATGATGGGAAATGGGGGAGACTAAGAGAGTCAGCCCTTCTCCAAG
GTCTGGTTATGGAAATCTGATTGTGGTAAAAGGAAGTTCTAAGGCTGTTTGGTAGAATGA
CTGGACCCCTCAAATCTAAGTTCCTGGTTATCATTTTCATTGTTTCCAAAATTTTGCAAG
TATGTGAAAAACCAGTCTTTGGTTTTGACTTGAAAGTGATATTTCGCTATTTAAATTACA
TCTTAATACATGTGAGCTATGTAATGACCTGGGTGAGCTAATTAGTTTTTAATACTTAAT
GGGAGGAAAAAAAACTTAAAAACTTGCCTATCAGTTTCTTTATTACTGTGTTTCCCGAGA
AAGAATTACCAAGCTCCTATTTTTAATTTGCTTTCAACTTTGTTTTGTCATGAACTGTAT
TATAATTTAAATGAGGTCGCTATTTTTGGATGCCTAAAAACCTGGTTTAAATTTAATTTT
TGGTTACATTTCAAGCTCAGTTTAAAAACATACATAAGAGCACAAATAATCTGACCATAT
AAAGAAGTACAGAAATGACCTGACAACCAGGCTCAGTGTACATACACAGCTTCGAGAAGA
GCAAGTGGTTTCAGAAACATAGAGCTGTAATAGAAGGGAAATTAGCATGGTTGAATGCGG
TCCTCATTACTTTGGAACATTTTAAATATTTTCATTCCATATTTTCATATAGAGCTCTAG
CTGCTCTGTAAACCCAAGTACTACAAATTCGCTTTGGCTTGTTTTATTGCTATTGGGTTT
TGTTAAATAAAACTTAGCATCAAGCTACAGGTACCAACACTTCCCTAAGTATTCCATTTT
ATCACTTACTTGCACTTTTTCTGACTTGTTTCTGGGAAAGTCATTTTGTCTTAGCTTGCA
GTTACTTAATTATTTTGTGTTAGAGACTTAAGAGGTTGGCATAGAACTTGGTTGGCTAGC
TTTAGTTATGTAACTAAACTATGCCTCATTAAGGTT

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               1-103, gnl|bosTau2|chr11 (45452963-45453065)
               

               
               1-103, gnl|Hg17|chr2 (64721006-64721107)
               

               
               1-103, gnl|Mm7|chr11 (20647874-20647775)
               


               
               109-425, gnl|bosTau2|chr11 (45453101-45453410)
               

               
               109-425, gnl|Hg17|chr2 (64721143-64721468)
               

               
               109-425, gnl|Mm7|chr11 (20647741-20647481)
               


               
               428-1056, gnl|bosTau2|chr11 (45453496-45454113)
               

               
               428-1056, gnl|Hg17|chr2 (64721469-64722096)
               

               
               428-1056, gnl|Mm7|chr11 (20647450-20646864)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-103, gnl|bosTau2|chr11 (45452963-45453065)
               

               
               1-103, gnl|Hg17|chr2 (64721006-64721107)
               

               
               1-103, gnl|Mm7|chr11 (20647874-20647775)
               


               
               109-425, gnl|bosTau2|chr11 (45453101-45453410)
               

               
               109-425, gnl|Hg17|chr2 (64721143-64721468)
               

               
               109-425, gnl|Mm7|chr11 (20647741-20647481)
               


               
               428-1056, gnl|bosTau2|chr11 (45453496-45454113)
               

               
               428-1056, gnl|Hg17|chr2 (64721469-64722096)
               

               
               428-1056, gnl|Mm7|chr11 (20647450-20646864)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	1-103, gnl\|bosTau2\|chr11 (45452963-45453065)
	1-103, gnl\|Hg17\|chr2 (64721006-64721107)
	1-103, gnl\|Mm7\|chr11 (20647874-20647775)

	109-425, gnl\|bosTau2\|chr11 (45453101-45453410)
	109-425, gnl\|Hg17\|chr2 (64721143-64721468)
	109-425, gnl\|Mm7\|chr11 (20647741-20647481)

	428-1056, gnl\|bosTau2\|chr11 (45453496-45454113)
	428-1056, gnl\|Hg17\|chr2 (64721469-64722096)
	428-1056, gnl\|Mm7\|chr11 (20647450-20646864)