Non-Coding RNA Search

Ss1.1-Pig4-TMW8042A23.5

Sequence:


               
               TTTTTTTTTTTTTTTGGAAGTTGCATACATTTTTTAATTGTAATTGAAAGAAGTCAGCCT
TCTAAGTATTGCTTTTACAGGTTTATCGAAGTCAAGTATTCATACCACTCACATTTTCAA
AAAATATTTCGGGCCGGAAGAGTGCCATCCCCTGGCACAAAGTATCAGTTCTGGCAACTT
GATGGACAGCAAACAACTTGAAATTAATGAGTCAAAACCCCACCCTCGGCCCCCCGATGT
GTTCTTTTCCTTCTGAGTCACTCTGAAACAGTTGCGGCTTCTGAGCCCGGCCCTGGGCCG
AACCCCGCCGGGCTTAGATCTCCAACAGCTGGGAATGGCTTCTGTGCGTGAAGTGTCCTC
TCCGAAGGTTAAGTGGGGGAAGCAGGTGCAGTCTGGGGTGAGGAGCGGGGAGGCCGACTC
TGGCGGGGTTCCTGTAAACATCCACGGCAATGGCGAAAGGGTGGAAGCCAAGGCAAGGCC
GTTTGCGCGACGATGCAGGCCAGTGAGGTCTGGGGGCACCCCTGCCACCGCCCTCGGGCA
GGGGCATGTGCCCTCCCGACCTCGGCACTCAGTCTCAATCTCTCTGTCCCACTGTCCTCG
GTCTGGACGGGAACCTCTCTGTTGGCACGGAGCTTTCCAGGGGAGCAGGCAGGCCTTGGA
GGCCGGAGAGGGCCTCCTCCTGGGGGTCCCATCCCTGGCCTGACGGTGCCCTCAACCAGC
AGCGGCAGCATGATCTAGGCGCTGGTCCAGGTCGAGGGTTGCGGGTCGTAGGGGGAGCGG
GGGACAGCAGCCAAGCCTACTCCAAGTAACCATCGAAGACGTCGAGCTCCGAATCGGCAT
CGTAGAGGCCCGAGCCGGGGTCAGAGAGCACGCCGAGGTCCACGAGCGCCTGGTCCACGT
CCTCGGGCAGGAAGACTAGGCCCACGTTAAGGACGATGTACTCCATGAGAAAGGCGTAGT
ATAGGATCAGCACATTGACGAAAAAAAGGCCCACGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTGGAAGTTGCATACATTTTTTAATTGTAATTGAAAGAAGTCAGCCT
TCTAAGTATTGCTTTTACAGGTTTATCGAAGTCAAGTATTCATACCACTCACATTTTCAA
AAAATATTTCGGGCCGGAAGAGTGCCATCCCCTGGCACAAAGTATCAGTTCTGGCAACTT
GATGGACAGCAAACAACTTGAAATTAATGAGTCAAAACCCCACCCTCGGCCCCCCGATGT
GTTCTTTTCCTTCTGAGTCACTCTGAAACAGTTGCGGCTTCTGAGCCCGGCCCTGGGCCG
AACCCCGCCGGGCTTAGATCTCCAACAGCTGGGAATGGCTTCTGTGCGTGAAGTGTCCTC
TCCGAAGGTTAAGTGGGGGAAGCAGGTGCAGTCTGGGGTGAGGAGCGGGGAGGCCGACTC
TGGCGGGGTTCCTGTAAACATCCACGGCAATGGCGAAAGGGTGGAAGCCAAGGCAAGGCC
GTTTGCGCGACGATGCAGGCCAGTGAGGTCTGGGGGCACCCCTGCCACCGCCCTCGGGCA
GGGGCATGTGCCCTCCCGACCTCGGCACTCAGTCTCAATCTCTCTGTCCCACTGTCCTCG
GTCTGGACGGGAACCTCTCTGTTGGCACGGAGCTTTCCAGGGGAGCAGGCAGGCCTTGGA
GGCCGGAGAGGGCCTCCTCCTGGGGGTCCCATCCCTGGCCTGACGGTGCCCTCAACCAGC
AGCGGCAGCATGATCTAGGCGCTGGTCCAGGTCGAGGGTTGCGGGTCGTAGGGGGAGCGG
GGGACAGCAGCCAAGCCTACTCCAAGTAACCATCGAAGACGTCGAGCTCCGAATCGGCAT
CGTAGAGGCCCGAGCCGGGGTCAGAGAGCACGCCGAGGTCCACGAGCGCCTGGTCCACGT
CCTCGGGCAGGAAGACTAGGCCCACGTTAAGGACGATGTACTCCATGAGAAAGGCGTAGT
ATAGGATCAGCACATTGACGAAAAAAAGGCCCACGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57524656|ref|NP_001003764.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57524656|ref|NP_001003764.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               244-343, - strand, RNAz p=0.684426

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               244-343, - strand, RNAz p=0.684426

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014015, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014015, -

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               14-650, gnl|bosTau2|chr25 (9436737-9436085)
               

               
               14-650, gnl|canFam2|chr6 (34814756-34814242)
               

               
               14-650, gnl|canFam2|chr6 (34814729-34814057)
               

               
               14-650, gnl|echTel1|scaffold_62814 (301-749)
               

               
               14-650, gnl|echTel1|scaffold_62814 (321-814)
               

               
               14-650, gnl|hg17|chr15 (20708497-20709144)
               

               
               14-650, gnl|hg17|chr16 (10930233-10930717)
               

               
               14-650, gnl|Hg17|chr16 (10930249-10930917)
               

               
               14-650, gnl|mm7|chr16 (10207728-10208187)
               

               
               14-650, gnl|mm7|chr16 (10207745-10208345)
               

               
               14-650, gnl|Mm7|chr16 (10207744-10208349)
               

               
               14-650, gnl|oryCun1|scaffold_145362 (9447-9898)
               

               
               14-650, gnl|oryCun1|scaffold_145362 (9464-10082)
               

               
               14-650, gnl|panTro1|chr16_random (7616623-7617275)
               

               
               14-650, gnl|panTro1|chr18 (11261685-11262168)
               

               
               14-650, gnl|rheMac2|chr20 (10998026-10998515)
               

               
               14-650, gnl|rheMac2|chr20 (10998053-10998698)
               

               
               14-650, gnl|rn3|chr10 (5084746-5084294)
               

               
               14-650, gnl|rn3|chr10 (5084729-5084140)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-650, gnl|bosTau2|chr25 (9436737-9436085)
               

               
               14-650, gnl|canFam2|chr6 (34814756-34814242)
               

               
               14-650, gnl|canFam2|chr6 (34814729-34814057)
               

               
               14-650, gnl|echTel1|scaffold_62814 (301-749)
               

               
               14-650, gnl|echTel1|scaffold_62814 (321-814)
               

               
               14-650, gnl|hg17|chr15 (20708497-20709144)
               

               
               14-650, gnl|hg17|chr16 (10930233-10930717)
               

               
               14-650, gnl|Hg17|chr16 (10930249-10930917)
               

               
               14-650, gnl|mm7|chr16 (10207728-10208187)
               

               
               14-650, gnl|mm7|chr16 (10207745-10208345)
               

               
               14-650, gnl|Mm7|chr16 (10207744-10208349)
               

               
               14-650, gnl|oryCun1|scaffold_145362 (9447-9898)
               

               
               14-650, gnl|oryCun1|scaffold_145362 (9464-10082)
               

               
               14-650, gnl|panTro1|chr16_random (7616623-7617275)
               

               
               14-650, gnl|panTro1|chr18 (11261685-11262168)
               

               
               14-650, gnl|rheMac2|chr20 (10998026-10998515)
               

               
               14-650, gnl|rheMac2|chr20 (10998053-10998698)
               

               
               14-650, gnl|rn3|chr10 (5084746-5084294)
               

               
               14-650, gnl|rn3|chr10 (5084729-5084140)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nmm (0.265604)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               cag (0.151194)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               cag (0.151194)
               

               
               pgl (0.118483)

	14-650, gnl\|bosTau2\|chr25 (9436737-9436085)
	14-650, gnl\|canFam2\|chr6 (34814756-34814242)
	14-650, gnl\|canFam2\|chr6 (34814729-34814057)
	14-650, gnl\|echTel1\|scaffold_62814 (301-749)
	14-650, gnl\|echTel1\|scaffold_62814 (321-814)
	14-650, gnl\|hg17\|chr15 (20708497-20709144)
	14-650, gnl\|hg17\|chr16 (10930233-10930717)
	14-650, gnl\|Hg17\|chr16 (10930249-10930917)
	14-650, gnl\|mm7\|chr16 (10207728-10208187)
	14-650, gnl\|mm7\|chr16 (10207745-10208345)
	14-650, gnl\|Mm7\|chr16 (10207744-10208349)
	14-650, gnl\|oryCun1\|scaffold_145362 (9447-9898)
	14-650, gnl\|oryCun1\|scaffold_145362 (9464-10082)
	14-650, gnl\|panTro1\|chr16_random (7616623-7617275)
	14-650, gnl\|panTro1\|chr18 (11261685-11262168)
	14-650, gnl\|rheMac2\|chr20 (10998026-10998515)
	14-650, gnl\|rheMac2\|chr20 (10998053-10998698)
	14-650, gnl\|rn3\|chr10 (5084746-5084294)
	14-650, gnl\|rn3\|chr10 (5084729-5084140)

	nmm (0.265604)
	fcc (0.197785)
	fbs (0.175346)
	cag (0.151194)
	pgl (0.118483)