Non-Coding RNA Search

Ss1.1-Pig4-TMW8042B01.3

Sequence:


               
               AAAGCCTTCAGACATCGTTCATCTCTTAATCAGCATCACAGAACTCACACTGGAGAGAAA
CCCTACGTATGTGATAAATGTCAGAAAGCTTTCAGCCAGAACATTAGCTTGATCCAACAC
TTGAGAACTCATTCTGGAGAGAAACCCTTTACATGCAATGAATGTGGGAAAACCTTTAGA
CAGATTAGACATCTTAGTGAACATGTAAGAATTCACACTGGGGAGAAGCCGTATGCATGT
ACTGCATGTTGTAAAACCTTTAGTCATAGAGCATATCTAACGCATCACCAGAGGATCCAT
ACTGGAGAGAGACCCTACAAATGTAAGGAATGTGGGAAAGCCTTTAGGCAGAGGATACAC
CTTAGCAACCATAAAACTGTTCATACAGGAGTGAAAGCATATGAATGCAAACGCTGTGGA
AAAGCCTATAGGCATGATTCATCGTTTAAAAAACATCAGAGGCATCACACAGGAGAAAAA
CCTTATGAATGTAATGAATGTGGAAAAGCCTTCAGCTATAATTCATCACTTACTCGACAC
CATGAAATACACAGGAGGAATGCCTTCCAAGATAATATGTAAAAACAGATTCTTCAACAC
GAGAACAAAAACCAAGTCTAAATTAGTGATTCTACACTTCAAATTTCAAGACTCTAAATT
TGAGGAATTGATATAATAATGCCAAATTTTAATTTTTCCCACTGTATAAATAAACATTAC
ATTGACAACTACTACTACTAATACCTCCATAAAAAGTCCTTAATTGAGAATAAAGGATGG
TCCTTCAAATTAAATTCAACAATATGGAAAATTGACACATTATTATTTTTATGATTTTAT
GGTGGATTAATAAATTATTCTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGCCTTCAGACATCGTTCATCTCTTAATCAGCATCACAGAACTCACACTGGAGAGAAA
CCCTACGTATGTGATAAATGTCAGAAAGCTTTCAGCCAGAACATTAGCTTGATCCAACAC
TTGAGAACTCATTCTGGAGAGAAACCCTTTACATGCAATGAATGTGGGAAAACCTTTAGA
CAGATTAGACATCTTAGTGAACATGTAAGAATTCACACTGGGGAGAAGCCGTATGCATGT
ACTGCATGTTGTAAAACCTTTAGTCATAGAGCATATCTAACGCATCACCAGAGGATCCAT
ACTGGAGAGAGACCCTACAAATGTAAGGAATGTGGGAAAGCCTTTAGGCAGAGGATACAC
CTTAGCAACCATAAAACTGTTCATACAGGAGTGAAAGCATATGAATGCAAACGCTGTGGA
AAAGCCTATAGGCATGATTCATCGTTTAAAAAACATCAGAGGCATCACACAGGAGAAAAA
CCTTATGAATGTAATGAATGTGGAAAAGCCTTCAGCTATAATTCATCACTTACTCGACAC
CATGAAATACACAGGAGGAATGCCTTCCAAGATAATATGTAAAAACAGATTCTTCAACAC
GAGAACAAAAACCAAGTCTAAATTAGTGATTCTACACTTCAAATTTCAAGACTCTAAATT
TGAGGAATTGATATAATAATGCCAAATTTTAATTTTTCCCACTGTATAAATAAACATTAC
ATTGACAACTACTACTACTAATACCTCCATAAAAAGTCCTTAATTGAGAATAAAGGATGG
TCCTTCAAATTAAATTCAACAATATGGAAAATTGACACATTATTATTTTTATGATTTTAT
GGTGGATTAATAAATTATTCTTCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-480, gnl|bosTau2|chr10 (8996480-8996001)
               

               
               1-480, gnl|Hg17|chr19 (42818285-42817755)
               

               
               1-480, gnl|Mm7|chr2 (127309911-127309516)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-480, gnl|bosTau2|chr10 (8996480-8996001)
               

               
               1-480, gnl|Hg17|chr19 (42818285-42817755)
               

               
               1-480, gnl|Mm7|chr2 (127309911-127309516)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               bfe (0.299715)
               

               
               pan (0.23596)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.299715)
               

               
               pan (0.23596)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               ret (0.128733)
               

               
               thg (0.126791)

	1-480, gnl\|bosTau2\|chr10 (8996480-8996001)
	1-480, gnl\|Hg17\|chr19 (42818285-42817755)
	1-480, gnl\|Mm7\|chr2 (127309911-127309516)

	bfe (0.299715)
	pan (0.23596)
	fco (0.157208)
	isp (0.150376)
	ret (0.128733)
	thg (0.126791)