Non-Coding RNA Search

Ss1.1-Pig4-TMW8042B01.5

Sequence:


               
               CTCGGGCTTCGGCCCAGGAGGCGGGACGCCAGTGGACTGGGCGCTGCCGTGGGGCCGGCA
TCAAAGCAGCAGCCGGCGAGCTGTATCCTTCCTCGGATCTGCGAGAGGGCGGTTCAGGGC
ACCCCTCGCACTGCGGTCCTCATAGCTCCGCTCCTGGGGACTGGGAAAGGACGCCTGGGA
GGGCTGGGGTTGATCTGGTGCCGCAGCACCAGCCCTAGGCAGCCTCTCGGGAATTTGGAA
AAGATCTCCGGTCCAGTCCAGAGGCTGACGGTCCTCTGGACTTGCGAAGGAAACCTGCCT
GGACGTTGGGCGTGTTTTGAAGAATCGTTGTGTTGAGTGGGGTTGTGGTCTGTCTGTAAA
AGGGGGGAATGAACAAAATCTGATACTCCCTGTCCTTCTTGAAAGAGACACCTCTGGAGC
TGAAAGCCTCAAGGACAGGCGCTCTCACGCCCCCATTTCTGGTCCTAACAGCATCCAAGG
CCGGTCTGGTCTGTATCCAGCCAGAAGATGCATGCAGCTTACAAGCAGAGAAGCAGGGTC
TGTGCCGTGTATCTTTGGTGTTTGTGTGTCACAGGCTGCGAAGTTTTAAGTATATTCTTG
CAAGTTCTGGAGTTCTAGCTCTATGATCGGTTTTCTGGATCCCTCCTCTCCTGCCTTTCA
GTCTTCTAGAAGAGTATGAAGAGGCATATACTCAGACCTGCTCATCCGGCTGTCTGCCAA
GGAAGCAGAACTTAATTTAGGAGAAGAGTCAGATTTTCAGAGTTGCTAAAGCCACTTCAG
CCTCTCGGATCTGCGAGAGGGCGGTTCAGGGCACCCCTCGCACTGCGGTCCTCATAGCTC
CGCTCCTGGGGACCCGACAGCAGAACCCCAGGAGCAGTTGACCTTCAAGGATGTATCCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGGCTTCGGCCCAGGAGGCGGGACGCCAGTGGACTGGGCGCTGCCGTGGGGCCGGCA
TCAAAGCAGCAGCCGGCGAGCTGTATCCTTCCTCGGATCTGCGAGAGGGCGGTTCAGGGC
ACCCCTCGCACTGCGGTCCTCATAGCTCCGCTCCTGGGGACTGGGAAAGGACGCCTGGGA
GGGCTGGGGTTGATCTGGTGCCGCAGCACCAGCCCTAGGCAGCCTCTCGGGAATTTGGAA
AAGATCTCCGGTCCAGTCCAGAGGCTGACGGTCCTCTGGACTTGCGAAGGAAACCTGCCT
GGACGTTGGGCGTGTTTTGAAGAATCGTTGTGTTGAGTGGGGTTGTGGTCTGTCTGTAAA
AGGGGGGAATGAACAAAATCTGATACTCCCTGTCCTTCTTGAAAGAGACACCTCTGGAGC
TGAAAGCCTCAAGGACAGGCGCTCTCACGCCCCCATTTCTGGTCCTAACAGCATCCAAGG
CCGGTCTGGTCTGTATCCAGCCAGAAGATGCATGCAGCTTACAAGCAGAGAAGCAGGGTC
TGTGCCGTGTATCTTTGGTGTTTGTGTGTCACAGGCTGCGAAGTTTTAAGTATATTCTTG
CAAGTTCTGGAGTTCTAGCTCTATGATCGGTTTTCTGGATCCCTCCTCTCCTGCCTTTCA
GTCTTCTAGAAGAGTATGAAGAGGCATATACTCAGACCTGCTCATCCGGCTGTCTGCCAA
GGAAGCAGAACTTAATTTAGGAGAAGAGTCAGATTTTCAGAGTTGCTAAAGCCACTTCAG
CCTCTCGGATCTGCGAGAGGGCGGTTCAGGGCACCCCTCGCACTGCGGTCCTCATAGCTC
CGCTCCTGGGGACCCGACAGCAGAACCCCAGGAGCAGTTGACCTTCAAGGATGTATCCGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               194-313, - strand, RNAz p=0.993988

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-313, - strand, RNAz p=0.993988

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               3-495, gnl|bosTau2|chr3 (68029522-68030023)
               

               
               3-495, gnl|Hg17|chr1 (40612201-40612666)
               


               
               582-789, gnl|bosTau2|chr3 (68031214-68031419)
               

               
               582-789, gnl|Hg17|chr1 (40613779-40613976)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-495, gnl|bosTau2|chr3 (68029522-68030023)
               

               
               3-495, gnl|Hg17|chr1 (40612201-40612666)
               


               
               582-789, gnl|bosTau2|chr3 (68031214-68031419)
               

               
               582-789, gnl|Hg17|chr1 (40613779-40613976)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fhi (0.169578)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)

	3-495, gnl\|bosTau2\|chr3 (68029522-68030023)
	3-495, gnl\|Hg17\|chr1 (40612201-40612666)

	582-789, gnl\|bosTau2\|chr3 (68031214-68031419)
	582-789, gnl\|Hg17\|chr1 (40613779-40613976)