Non-Coding RNA Search

Ss1.1-Pig4-TMW8042B02.3

Sequence:


               
               GAGACCAGAGAGAAGAGAGAAAACAAACTCAAAGTTACACCTCCTGTCATCAGTCTGATG
GGATCCACCCAGGAAAAGGTAGATGAGGCCCAAGCATGGATCCAAAGGATTCTGATCCTC
CAGGATTCCCACATCATTGAGGATAAGCATATCCTCTACTTGGGGAAAAAGGAACATGAC
GATTTGTCTCAGCTTCAGAAAACCTTTCGGGTCTCTATCTCAGAGACTGTCAGTCTGGAA
AAGGCAAAGTTAGAGATTAAAGGAGCCCGGGCTGACCTCATTGATGCCGTTATTAACATT
GAACATATGCTATGTGAGGTTCAACAGGAAATGGCACGAAAAAAGGAGCAAGTCCTTTGG
AGCTTGTCAGGGCAACAGACTCATCAGCAACCAGAAAATCAGAATCAAATGAAGGAAAAT
ACATTTCTGAAATGCCTAAAGCTTTCAACTCCAGAAATTCAGGATCAAAAGAAACAGTTT
GAAGACTGTGGTTTTCGGGTTATAAAGGTGGAGAAAGTGGACAATGTGCTTCTCACGGCT
ACCTTCCAAAGAAGGAAGAAAATAATGGAAGAGAGAACTCATAGGAAACCTGTGAGCCAC
AGGTTGTTCCAGCAAGTCCCATACCAGTTCTGCAAAATGGTATGCAGAGTCGGCTTTCAA
AGAATGTACTCAATGCCCTGCGACCCAAAATATGGAGCTGGAATATATTTCACCAAGAAC
CTCAGAAACATAGCACGCCAGGTCAAGAAAGCATCTGCCACAGATAAGCTCATCTATGTG
TTTGAGGCTGAAGTACTCACAGGCTCCTTCTGCCAGGGTAATCACTTAAATATTGTTCCC
CCACCATTGCATCCTGGAGCCATAGAGAGCCATGACAGTGTGGTTGACAAAGTTTCCAGC
CCTGAAACCTTTGTCATTTTTAGTGGCACACAGGCTATGCCCCAATATTTGTGGACTTGC
CTCCAGGATCATGTACAGGATTATTTAGGACAAATGGTGCTCTCTTCACAGCAGTTTCAG
AGGAAATTCTCAAGTGGCAGCCCTGTTGATTAACCTCCACATCATTTTAACAACAGGCAT
GACCTTGCTTTGGAAAAACCAACCAAATAATGACCATCAGTGACTCAAAGGCTGGTTTGA
ATATGTCAGATGGGTTGTCTGTATGGACTGACAGGGTAATTGAAGAGATCAAATACAAAC
TAGCATCTTCGTGCCTTCATCTTTATCTTCCTCTCTTAGGTTGGGTAGATACCAGCTGAA
GCTTTCTCAGGACACTTCCCTCTCCTTCAAGCTGTCCTTTCTTTACCATAGTTTAATATT
AACAGTGTTTTTCATATAACAAAGAGATTTTTCCAGTAAATAATCCAGTCCTTTTATTTT
GTAAAATGATACTGTAATCTCTTGGAACAATAATGTGATCTTAGATTTTCCAGAGAATCT
TATAAAGTACTTTAGATATCAAAATAAATCACCTTTGCCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACCAGAGAGAAGAGAGAAAACAAACTCAAAGTTACACCTCCTGTCATCAGTCTGATG
GGATCCACCCAGGAAAAGGTAGATGAGGCCCAAGCATGGATCCAAAGGATTCTGATCCTC
CAGGATTCCCACATCATTGAGGATAAGCATATCCTCTACTTGGGGAAAAAGGAACATGAC
GATTTGTCTCAGCTTCAGAAAACCTTTCGGGTCTCTATCTCAGAGACTGTCAGTCTGGAA
AAGGCAAAGTTAGAGATTAAAGGAGCCCGGGCTGACCTCATTGATGCCGTTATTAACATT
GAACATATGCTATGTGAGGTTCAACAGGAAATGGCACGAAAAAAGGAGCAAGTCCTTTGG
AGCTTGTCAGGGCAACAGACTCATCAGCAACCAGAAAATCAGAATCAAATGAAGGAAAAT
ACATTTCTGAAATGCCTAAAGCTTTCAACTCCAGAAATTCAGGATCAAAAGAAACAGTTT
GAAGACTGTGGTTTTCGGGTTATAAAGGTGGAGAAAGTGGACAATGTGCTTCTCACGGCT
ACCTTCCAAAGAAGGAAGAAAATAATGGAAGAGAGAACTCATAGGAAACCTGTGAGCCAC
AGGTTGTTCCAGCAAGTCCCATACCAGTTCTGCAAAATGGTATGCAGAGTCGGCTTTCAA
AGAATGTACTCAATGCCCTGCGACCCAAAATATGGAGCTGGAATATATTTCACCAAGAAC
CTCAGAAACATAGCACGCCAGGTCAAGAAAGCATCTGCCACAGATAAGCTCATCTATGTG
TTTGAGGCTGAAGTACTCACAGGCTCCTTCTGCCAGGGTAATCACTTAAATATTGTTCCC
CCACCATTGCATCCTGGAGCCATAGAGAGCCATGACAGTGTGGTTGACAAAGTTTCCAGC
CCTGAAACCTTTGTCATTTTTAGTGGCACACAGGCTATGCCCCAATATTTGTGGACTTGC
CTCCAGGATCATGTACAGGATTATTTAGGACAAATGGTGCTCTCTTCACAGCAGTTTCAG
AGGAAATTCTCAAGTGGCAGCCCTGTTGATTAACCTCCACATCATTTTAACAACAGGCAT
GACCTTGCTTTGGAAAAACCAACCAAATAATGACCATCAGTGACTCAAAGGCTGGTTTGA
ATATGTCAGATGGGTTGTCTGTATGGACTGACAGGGTAATTGAAGAGATCAAATACAAAC
TAGCATCTTCGTGCCTTCATCTTTATCTTCCTCTCTTAGGTTGGGTAGATACCAGCTGAA
GCTTTCTCAGGACACTTCCCTCTCCTTCAAGCTGTCCTTTCTTTACCATAGTTTAATATT
AACAGTGTTTTTCATATAACAAAGAGATTTTTCCAGTAAATAATCCAGTCCTTTTATTTT
GTAAAATGATACTGTAATCTCTTGGAACAATAATGTGATCTTAGATTTTCCAGAGAATCT
TATAAAGTACTTTAGATATCAAAATAAATCACCTTTGCCAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q658Y0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q658Y0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               73-232, - strand, RNAz p=0.902873

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-232, - strand, RNAz p=0.902873

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-371, gnl|bosTau2|chr1 (39330081-39330443)
               

               
               5-371, gnl|Hg17|chr3 (123742385-123742008)
               

               
               5-371, gnl|Mm7|chr16 (35638201-35638578)
               


               
               682-1476, gnl|bosTau2|chr1 (39337604-39338410)
               

               
               682-1476, gnl|Hg17|chr3 (123730281-123729471)
               

               
               682-1476, gnl|Mm7|chr16 (35646047-35646808)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-371, gnl|bosTau2|chr1 (39330081-39330443)
               

               
               5-371, gnl|Hg17|chr3 (123742385-123742008)
               

               
               5-371, gnl|Mm7|chr16 (35638201-35638578)
               


               
               682-1476, gnl|bosTau2|chr1 (39337604-39338410)
               

               
               682-1476, gnl|Hg17|chr3 (123730281-123729471)
               

               
               682-1476, gnl|Mm7|chr16 (35646047-35646808)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               sin (0.349895)
               

               
               jej (0.197844)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               jej (0.197844)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               kid (0.129735)
               

               
               thg (0.126791)

	5-371, gnl\|bosTau2\|chr1 (39330081-39330443)
	5-371, gnl\|Hg17\|chr3 (123742385-123742008)
	5-371, gnl\|Mm7\|chr16 (35638201-35638578)

	682-1476, gnl\|bosTau2\|chr1 (39337604-39338410)
	682-1476, gnl\|Hg17\|chr3 (123730281-123729471)
	682-1476, gnl\|Mm7\|chr16 (35646047-35646808)

	sin (0.349895)
	jej (0.197844)
	rec (0.17307)
	nje (0.16592)
	fat (0.147427)
	pty (0.142714)
	kid (0.129735)
	thg (0.126791)