Non-Coding RNA Search

Ss1.1-Pig4-TMW8042B04.3

Sequence:


               
               GCAAAAATCTGCGAAACTCAAGCAAAGGGATTTCCGAAAAAGCAGACTTACGAATTCTGA
GTTTGGAAAATATATTTGGAGGAGAAAAAAACATAGTCTAATTGGATGCCTTCATTTTAG
TGTTTTTGAATCACCCATCCTCAGTGTTGAAAAATGGTTTTGTATAACTGAGGGTATTGT
TGGTTCAAACTATGTTAGTTTACAGTTTGTTGCAAACATTGTAAAATACAGCAACATGTA
TATTAACTTTTTTCTATTTATCTTTATTATAGAAACTATCTTAGAATGTTCTTTGTAGAG
TAGCATGGTGACGATGGTCTCACACTCTTGGTGTGAATGGTAGTTTAGCAAGCGTAGCTC
AAGGATTTGCAAGGTTAGGAAGACGGACAAGAGAGCCTCTCTCCCCACCCCCACTTAAGT
ATGAAATTTGGTAAGTTAGAATACTTTGTAAAACCAAATTCATATTAATTACCATTGTGT
AAGAAGTGTTTGTTTTTAACCGCATTGAAGATAATCGGGAAAGATTTTTTTCCTTAATGT
TTCTCCCGAGTGTAGTACTATAACAAAAATTTAATGCTAAGAAACATTTTATATGCTCCT
TTGAATATGCAATTTAATCTAGATTATCTATTTTTCTCCCACAATAACTAATCTGTTTTT
AGTATTGGCAACATTTGGCAAGTTTGTTTTTTAGATATAAACTGTGGTTCATCTGTTCAC
TGTTTCTAGGGAAAAAAAATCATTCCCACGAGAAAAAGCATAAATTAACAAGGAGAGTGA
CTTGATTTGCTTTAAAAAAAAAAAATGCTTAATTAATTTACTGTCCTGTATTTGGCTTTA
TCCAGGTGTGAAGACATTTAGAGAGATATAAAGGGTCAAAAGACGACAATGCTCTTTTGT
TTTTAATCTAACAGACCAGCCTTAACTGTGGGCTTCAATCCTAATAGAGTTGCCACAGTG
GGACTCAAGGAAATGTATGGTTGGCAGATGAGCACCCGTGACAGCCAAGTGGAGGGACAC
ACTTGCATGGTCAGTTTATTCTCTAATTCCAATAAGTTCTTTGCTTTCAGAAGCAAGAAA
ACATTTCTTCTTTCTCCCCTCCCCCCCTTTTTTAAACACACCACCAGGAAAGTATAGACA
GTTGCACTACATCAAACCCTTTGTGACACTTGTAGAAATCAGTACCCTTTTAGATTACAC
AGAATCATATTTTTTAATCTTTTGATTTATTTTCCTTTAGTTCAAAAAGTTGTATAGTAC
TTAATTGACTAGCAAATTTTTGTATATGGTAGCATAGCTTTAATTTATCCTATTACAATG
CTGTTCTGAATTTTCTTTAGTTTTTAAAAAAATCAAAATCTGTTGCTTAGAAGTCATGAA
CTATTTTATTTTACTTCAACTTGTCAGAATTTCCTTGTTTTTTCAAAAAAAAAATGATCA
TTTGGGTTCACTCAGGAAATGCATGTCAGGAAACTTGTATTATAAGTTGACTAGTTGTGA
TGTATCAGTAACTGCTGTTACCCCTTTTTCAAAGAAATATAATTGATTTTGAAGTTTTCC
AGATTGTCACATGCTTTGTGACTAATGCAAGGAAATCAAGTCCTGTGTTGTATTTGTTCT
AGTCATTTCTATTCTGGCTATATATTGTAGCTAATTTTTATTTGCAATTAATTTATTCAA
ACTAAGTAAATACTTTTCAAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAAAATCTGCGAAACTCAAGCAAAGGGATTTCCGAAAAAGCAGACTTACGAATTCTGA
GTTTGGAAAATATATTTGGAGGAGAAAAAAACATAGTCTAATTGGATGCCTTCATTTTAG
TGTTTTTGAATCACCCATCCTCAGTGTTGAAAAATGGTTTTGTATAACTGAGGGTATTGT
TGGTTCAAACTATGTTAGTTTACAGTTTGTTGCAAACATTGTAAAATACAGCAACATGTA
TATTAACTTTTTTCTATTTATCTTTATTATAGAAACTATCTTAGAATGTTCTTTGTAGAG
TAGCATGGTGACGATGGTCTCACACTCTTGGTGTGAATGGTAGTTTAGCAAGCGTAGCTC
AAGGATTTGCAAGGTTAGGAAGACGGACAAGAGAGCCTCTCTCCCCACCCCCACTTAAGT
ATGAAATTTGGTAAGTTAGAATACTTTGTAAAACCAAATTCATATTAATTACCATTGTGT
AAGAAGTGTTTGTTTTTAACCGCATTGAAGATAATCGGGAAAGATTTTTTTCCTTAATGT
TTCTCCCGAGTGTAGTACTATAACAAAAATTTAATGCTAAGAAACATTTTATATGCTCCT
TTGAATATGCAATTTAATCTAGATTATCTATTTTTCTCCCACAATAACTAATCTGTTTTT
AGTATTGGCAACATTTGGCAAGTTTGTTTTTTAGATATAAACTGTGGTTCATCTGTTCAC
TGTTTCTAGGGAAAAAAAATCATTCCCACGAGAAAAAGCATAAATTAACAAGGAGAGTGA
CTTGATTTGCTTTAAAAAAAAAAAATGCTTAATTAATTTACTGTCCTGTATTTGGCTTTA
TCCAGGTGTGAAGACATTTAGAGAGATATAAAGGGTCAAAAGACGACAATGCTCTTTTGT
TTTTAATCTAACAGACCAGCCTTAACTGTGGGCTTCAATCCTAATAGAGTTGCCACAGTG
GGACTCAAGGAAATGTATGGTTGGCAGATGAGCACCCGTGACAGCCAAGTGGAGGGACAC
ACTTGCATGGTCAGTTTATTCTCTAATTCCAATAAGTTCTTTGCTTTCAGAAGCAAGAAA
ACATTTCTTCTTTCTCCCCTCCCCCCCTTTTTTAAACACACCACCAGGAAAGTATAGACA
GTTGCACTACATCAAACCCTTTGTGACACTTGTAGAAATCAGTACCCTTTTAGATTACAC
AGAATCATATTTTTTAATCTTTTGATTTATTTTCCTTTAGTTCAAAAAGTTGTATAGTAC
TTAATTGACTAGCAAATTTTTGTATATGGTAGCATAGCTTTAATTTATCCTATTACAATG
CTGTTCTGAATTTTCTTTAGTTTTTAAAAAAATCAAAATCTGTTGCTTAGAAGTCATGAA
CTATTTTATTTTACTTCAACTTGTCAGAATTTCCTTGTTTTTTCAAAAAAAAAATGATCA
TTTGGGTTCACTCAGGAAATGCATGTCAGGAAACTTGTATTATAAGTTGACTAGTTGTGA
TGTATCAGTAACTGCTGTTACCCCTTTTTCAAAGAAATATAATTGATTTTGAAGTTTTCC
AGATTGTCACATGCTTTGTGACTAATGCAAGGAAATCAAGTCCTGTGTTGTATTTGTTCT
AGTCATTTCTATTCTGGCTATATATTGTAGCTAATTTTTATTTGCAATTAATTTATTCAA
ACTAAGTAAATACTTTTCAAAATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               102-252, + strand, RNAz p=0.981828

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               102-252, + strand, RNAz p=0.981828

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_020651, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020651, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               39-1075, gnl|bosTau2|chr1 (22602438-22601398)
               

               
               39-1075, gnl|Hg17|chr2 (64233307-64232264)
               

               
               39-1075, gnl|Mm7|chr11 (21100698-21101750)
               


               
               1108-1704, gnl|bosTau2|chr1 (22601388-22600801)
               

               
               1108-1704, gnl|Hg17|chr2 (64232229-64231646)
               

               
               1108-1704, gnl|Mm7|chr11 (21101771-21102332)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-1075, gnl|bosTau2|chr1 (22602438-22601398)
               

               
               39-1075, gnl|Hg17|chr2 (64233307-64232264)
               

               
               39-1075, gnl|Mm7|chr11 (21100698-21101750)
               


               
               1108-1704, gnl|bosTau2|chr1 (22601388-22600801)
               

               
               1108-1704, gnl|Hg17|chr2 (64232229-64231646)
               

               
               1108-1704, gnl|Mm7|chr11 (21101771-21102332)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               tra (0.861645)
               

               
               liv (0.585137)
               

               
               pro (0.512033)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.861645)
               

               
               liv (0.585137)
               

               
               pro (0.512033)
               

               
               vin (0.332557)
               

               
               mga (0.32041)
               

               
               spl (0.286369)
               

               
               hyp (0.285673)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)

	39-1075, gnl\|bosTau2\|chr1 (22602438-22601398)
	39-1075, gnl\|Hg17\|chr2 (64233307-64232264)
	39-1075, gnl\|Mm7\|chr11 (21100698-21101750)

	1108-1704, gnl\|bosTau2\|chr1 (22601388-22600801)
	1108-1704, gnl\|Hg17\|chr2 (64232229-64231646)
	1108-1704, gnl\|Mm7\|chr11 (21101771-21102332)

	tra (0.861645)
	liv (0.585137)
	pro (0.512033)
	vin (0.332557)
	mga (0.32041)
	spl (0.286369)
	hyp (0.285673)
	mgp (0.230681)
	aor (0.195274)
	mgm (0.180343)
	rec (0.17307)
	eye (0.170503)
	fco (0.157208)
	ste (0.135208)
	ute (0.132784)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	cbl (0.114797)
	jca (0.11396)