Non-Coding RNA Search

Ss1.1-Pig4-TMW8042B06.3

Sequence:


               
               GTGACCCCCACCGGGGCCTCTACTGCGACTATAGTGGGGACCGCCCGAGGTACGCAGTAG
GAGTGTGTGCACAGGTGGTCGGCGTGGGCTGCGTGCTGGACGGCGTGCGCTACAACAACG
GCCAGTCCTTCCAGCCCAACTGCAAGTACAACTGCACGTGCGTGGACGGCGCGGTGGGCT
GCACGCCTCTGTGCCTCCGTGTGCGGCCCCCGCGCCTCTGGTGCCGCCAGCCCCGGCGGG
TGAGTGTGCCCGGGCGCTGCTGTGAGCAGTGGGTATGCGACGACGACGCCAGGAGGCCAC
GCAAGACTGCGCCACGCCACACAGGCGCCTTCGCAGCCACAGACGAGGTAGAGCCATGGC
ACAGGAACTGCATAGCCTACACCAGCCCCTGGAGCCCCTGTTCCACCAGCTGCGGCCTGG
GGGTCTCCACCCGCATCTCCAGTGTCAACCCCCGGTGCTGGCCGGAGCAGGAGAGCCGCC
TCTGCAACCTGCGGCCCTGTGACGTGGACCTCCGGCCGCGCATCAAGGAAGGGAAGACGT
GTCTGGCCGTGTACCAGCCAGAGGCGCCTGTGAACTTTACGCTCGCCGGCTGCACCAGCA
CGCGCTCCTACCGGCCCAAGTACTGCGGGGTCTGCACGGACGGCAGGTGCTGCATCCCCT
ACAAGTCCAAGACCATTGACGTCTCCTTCCGGTGTCCCGACGGGCCTGGCTTCTCCCGCC
GGGCCCTGTGGATCAACGCCTGTTTCTGCAATCTGAGCTGTCGGAATCCCAATGATATTT
TTGCCGACTTGGACTCCTACCCTGAATTCTCAGAAATGGCCAACTAGGCAGGCACGAAAC
ACCGGCTTGAGGCCTGGCCTCATGCTTGTAAAGCAGCCAGCCTTCCAAGGCCCACACTGC
GCCTTTTTTTTTTTTTTTTTCAGTCCACTTTCCACTTGTTTCTAATGACCCCAGTCCAGA
CCCGTGGCCCCCTTTCCTGTCTCAGACCACCCAAAGCACCCACGAGGGTGCCACTCAGGC
CCAGACAGTGGGTCCTCTTCTGAGTAGCATTCCACATACACTCCAAAGAAAGTGCCTGTC
TCCAGCTGTTCTGGACAGCAGTCAAGCCTGACCCGGCCTGTCTAGGTCACCGGAAGTCCT
GCTGGATCTTGCCCAAGTCCCAAGGAACAGAATCAGCTAGGCATTCACCATCACTGCGTC
TACCTCATTAGACGCAAAAACAAGAGTCTCTTTGGGTCCATTCGGAAGGATGGATGGGAT
TTAGGACAGCGGACTGGTCCCATTATTTGGACCTGGCCAAGCAGGACCCTAATTGACCGT
GTCAACCATGGCACACCAAACTCTCTCTCATTCCATAGATGTGTGTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACCCCCACCGGGGCCTCTACTGCGACTATAGTGGGGACCGCCCGAGGTACGCAGTAG
GAGTGTGTGCACAGGTGGTCGGCGTGGGCTGCGTGCTGGACGGCGTGCGCTACAACAACG
GCCAGTCCTTCCAGCCCAACTGCAAGTACAACTGCACGTGCGTGGACGGCGCGGTGGGCT
GCACGCCTCTGTGCCTCCGTGTGCGGCCCCCGCGCCTCTGGTGCCGCCAGCCCCGGCGGG
TGAGTGTGCCCGGGCGCTGCTGTGAGCAGTGGGTATGCGACGACGACGCCAGGAGGCCAC
GCAAGACTGCGCCACGCCACACAGGCGCCTTCGCAGCCACAGACGAGGTAGAGCCATGGC
ACAGGAACTGCATAGCCTACACCAGCCCCTGGAGCCCCTGTTCCACCAGCTGCGGCCTGG
GGGTCTCCACCCGCATCTCCAGTGTCAACCCCCGGTGCTGGCCGGAGCAGGAGAGCCGCC
TCTGCAACCTGCGGCCCTGTGACGTGGACCTCCGGCCGCGCATCAAGGAAGGGAAGACGT
GTCTGGCCGTGTACCAGCCAGAGGCGCCTGTGAACTTTACGCTCGCCGGCTGCACCAGCA
CGCGCTCCTACCGGCCCAAGTACTGCGGGGTCTGCACGGACGGCAGGTGCTGCATCCCCT
ACAAGTCCAAGACCATTGACGTCTCCTTCCGGTGTCCCGACGGGCCTGGCTTCTCCCGCC
GGGCCCTGTGGATCAACGCCTGTTTCTGCAATCTGAGCTGTCGGAATCCCAATGATATTT
TTGCCGACTTGGACTCCTACCCTGAATTCTCAGAAATGGCCAACTAGGCAGGCACGAAAC
ACCGGCTTGAGGCCTGGCCTCATGCTTGTAAAGCAGCCAGCCTTCCAAGGCCCACACTGC
GCCTTTTTTTTTTTTTTTTTCAGTCCACTTTCCACTTGTTTCTAATGACCCCAGTCCAGA
CCCGTGGCCCCCTTTCCTGTCTCAGACCACCCAAAGCACCCACGAGGGTGCCACTCAGGC
CCAGACAGTGGGTCCTCTTCTGAGTAGCATTCCACATACACTCCAAAGAAAGTGCCTGTC
TCCAGCTGTTCTGGACAGCAGTCAAGCCTGACCCGGCCTGTCTAGGTCACCGGAAGTCCT
GCTGGATCTTGCCCAAGTCCCAAGGAACAGAATCAGCTAGGCATTCACCATCACTGCGTC
TACCTCATTAGACGCAAAAACAAGAGTCTCTTTGGGTCCATTCGGAAGGATGGATGGGAT
TTAGGACAGCGGACTGGTCCCATTATTTGGACCTGGCCAAGCAGGACCCTAATTGACCGT
GTCAACCATGGCACACCAAACTCTCTCTCATTCCATAGATGTGTGTAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57095622|ref|XP_539169.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57095622|ref|XP_539169.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               102-1037, - strand, RNAz p=0.721476

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               102-1037, - strand, RNAz p=0.721476

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               63-333, gnl|bosTau2|chr14 (3827872-3827602)
               

               
               63-333, gnl|Hg17|chr8 (134301996-134302266)
               

               
               63-333, gnl|Mm7|chr15 (66996498-66996768)
               


               
               526-1365, gnl|bosTau2|chr14 (3824950-3824135)
               

               
               526-1365, gnl|Hg17|chr8 (134308834-134309644)
               

               
               526-1365, gnl|Mm7|chr15 (67002832-67003645)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-333, gnl|bosTau2|chr14 (3827872-3827602)
               

               
               63-333, gnl|Hg17|chr8 (134301996-134302266)
               

               
               63-333, gnl|Mm7|chr15 (66996498-66996768)
               


               
               526-1365, gnl|bosTau2|chr14 (3824950-3824135)
               

               
               526-1365, gnl|Hg17|chr8 (134308834-134309644)
               

               
               526-1365, gnl|Mm7|chr15 (67002832-67003645)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               amn (0.417711)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	63-333, gnl\|bosTau2\|chr14 (3827872-3827602)
	63-333, gnl\|Hg17\|chr8 (134301996-134302266)
	63-333, gnl\|Mm7\|chr15 (66996498-66996768)

	526-1365, gnl\|bosTau2\|chr14 (3824950-3824135)
	526-1365, gnl\|Hg17\|chr8 (134308834-134309644)
	526-1365, gnl\|Mm7\|chr15 (67002832-67003645)