Non-Coding RNA Search

Ss1.1-Pig4-TMW8042B15.5

Sequence:


               
               ACCTTCTCTGGGTGCGGGCCCGCGGGTAGTTGGAAAGAGGTCAGGCAGAGCTACGGGAAG
GGCACCCGGAGGAAGAGGAGGGCGAGAGGCGTTGAGGCAGGGGAGAGTGACGAGGTGCCC
TTCATTGTCAGCCAGGGACGAGCACGCGGCCACTCTCCCCTCACTCCGACTGCCCACGAT
CACTCGTCCGCAGAAATGTCAGCCGCCGGCGCCCGGGGCCTGCGAGCCACCTACCACCGG
GTTCTCGATAAAGTGGAGCTCCTACTGCCTGAAAAATTGAGGCCGTTGTACAACCACCCA
GCAGGTCCCAGAACAGTGTTTTTCTGGGCTCCAATTATGAAATGGGGGTTGGTGTGTGCT
GGCTTGGCTGACATGGCCAGACCTGCAGAAAAACTCAGCACAGCTCAATCTGCTGTTTTG
ATGGCTACAGGATTTATTTGGTCAAGATACTCACTTGTAATTATTCCAAAAAACTGGAGT
CTCTTTGCTGTTAACTTCTTTGTTGGGACAGCAGGAGCCTCTCAGCTCTTCCGTATTTGG
AGATATAACCAAGAACTAAAAGCTAAAGCAAACAAATAAGAGTTCCTGATCACCCTAACC
ATCTAGATGTGGACATAACCACTGGGACCTAGTTTGATTTATTATTCGGTTATTGTAACT
GTGCTAATGTTTGGAAGGCATTTTTAAAAATCTAACTGTAACTGGGAGATAGTACCTGAT
TCAACAGAAAAATAAAGCAAACTTTTAATAATATTGTCTCTTTACATATGACTTAAAGAA
TTTATCTATGGATATTAGTAACACTTTTTTCTACTATTTGTCCATAATAAATCATACTTG
CTCATACAAAAAAAAAAAAAAAAATCTAGTCAATCAAAGTTGTATATATAAGAGCAGTCA
CATTCCAGTGAGTCAAAGATAGTTGAAAGGTTGTACAACTGTTATACAGTGAAAGATGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTTCTCTGGGTGCGGGCCCGCGGGTAGTTGGAAAGAGGTCAGGCAGAGCTACGGGAAG
GGCACCCGGAGGAAGAGGAGGGCGAGAGGCGTTGAGGCAGGGGAGAGTGACGAGGTGCCC
TTCATTGTCAGCCAGGGACGAGCACGCGGCCACTCTCCCCTCACTCCGACTGCCCACGAT
CACTCGTCCGCAGAAATGTCAGCCGCCGGCGCCCGGGGCCTGCGAGCCACCTACCACCGG
GTTCTCGATAAAGTGGAGCTCCTACTGCCTGAAAAATTGAGGCCGTTGTACAACCACCCA
GCAGGTCCCAGAACAGTGTTTTTCTGGGCTCCAATTATGAAATGGGGGTTGGTGTGTGCT
GGCTTGGCTGACATGGCCAGACCTGCAGAAAAACTCAGCACAGCTCAATCTGCTGTTTTG
ATGGCTACAGGATTTATTTGGTCAAGATACTCACTTGTAATTATTCCAAAAAACTGGAGT
CTCTTTGCTGTTAACTTCTTTGTTGGGACAGCAGGAGCCTCTCAGCTCTTCCGTATTTGG
AGATATAACCAAGAACTAAAAGCTAAAGCAAACAAATAAGAGTTCCTGATCACCCTAACC
ATCTAGATGTGGACATAACCACTGGGACCTAGTTTGATTTATTATTCGGTTATTGTAACT
GTGCTAATGTTTGGAAGGCATTTTTAAAAATCTAACTGTAACTGGGAGATAGTACCTGAT
TCAACAGAAAAATAAAGCAAACTTTTAATAATATTGTCTCTTTACATATGACTTAAAGAA
TTTATCTATGGATATTAGTAACACTTTTTTCTACTATTTGTCCATAATAAATCATACTTG
CTCATACAAAAAAAAAAAAAAAAATCTAGTCAATCAAAGTTGTATATATAAGAGCAGTCA
CATTCCAGTGAGTCAAAGATAGTTGAAAGGTTGTACAACTGTTATACAGTGAAAGATGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57089027|ref|XP_537209.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57089027|ref|XP_537209.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-306, gnl|bosTau2|chr3 (614746-615049)
               

               
               1-306, gnl|Hg17|chr1 (164636926-164636627)
               

               
               1-306, gnl|Mm7|chr1 (165431918-165432216)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-306, gnl|bosTau2|chr3 (614746-615049)
               

               
               1-306, gnl|Hg17|chr1 (164636926-164636627)
               

               
               1-306, gnl|Mm7|chr1 (165431918-165432216)

Expressed library(ies): 50 entry(ies)

More info

Expressed library(ies): 50 entry(ies)

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               bfe (1.19886)
               

               
               fat (1.03199)
               

               
               hea (1.02249)
               

               
               ldo (0.873024)
               

               
               fco (0.78604)
               

               
               isp (0.75188)
               

               
               hlv (0.696282)
               

               
               mgp (0.692042)
               

               
               vin (0.665115)
               

               
               nms (0.641574)
               

               
               ssp (0.542079)
               

               
               sto (0.539471)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               med (0.465008)
               

               
               spc (0.453463)
               

               
               che (0.408942)
               

               
               ste (0.405625)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 50 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (1.19886)
               

               
               fat (1.03199)
               

               
               hea (1.02249)
               

               
               ldo (0.873024)
               

               
               fco (0.78604)
               

               
               isp (0.75188)
               

               
               hlv (0.696282)
               

               
               mgp (0.692042)
               

               
               vin (0.665115)
               

               
               nms (0.641574)
               

               
               ssp (0.542079)
               

               
               sto (0.539471)
               

               
               duo (0.518403)
               

               
               pro (0.512033)
               

               
               med (0.465008)
               

               
               spc (0.453463)
               

               
               che (0.408942)
               

               
               ste (0.405625)
               

               
               aor (0.390549)
               

               
               kid (0.389206)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               nje (0.33184)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               csk (0.281492)
               

               
               lyg (0.266205)
               

               
               thg (0.253582)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               mas (0.210305)
               

               
               fli (0.202881)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	1-306, gnl\|bosTau2\|chr3 (614746-615049)
	1-306, gnl\|Hg17\|chr1 (164636926-164636627)
	1-306, gnl\|Mm7\|chr1 (165431918-165432216)

	bfe (1.19886)
	fat (1.03199)
	hea (1.02249)
	ldo (0.873024)
	fco (0.78604)
	isp (0.75188)
	hlv (0.696282)
	mgp (0.692042)
	vin (0.665115)
	nms (0.641574)
	ssp (0.542079)
	sto (0.539471)
	duo (0.518403)
	pro (0.512033)
	med (0.465008)
	spc (0.453463)
	che (0.408942)
	ste (0.405625)
	aor (0.390549)
	kid (0.389206)
	fbs (0.350693)
	rec (0.346141)
	nje (0.33184)
	cje (0.330469)
	sme (0.305437)
	csk (0.281492)
	lyg (0.266205)
	thg (0.253582)
	pgl (0.236967)
	ebs (0.236602)
	ecc (0.23007)
	mas (0.210305)
	fli (0.202881)
	jej (0.197844)
	fcc (0.197785)
	sag (0.182715)
	mgm (0.180343)
	sin (0.174948)
	nco (0.161734)
	csp (0.161186)
	mga (0.160205)
	cag (0.151194)
	lin (0.145603)
	hyp (0.142837)
	pty (0.142714)
	cst (0.140036)
	pla (0.133672)
	cov (0.132153)
	nbm (0.0993246)
	eje (0.0988338)