Non-Coding RNA Search

Ss1.1-Pig4-TMW8042B20.5

Sequence:


               
               GCGCCCCCGCGCCCTACTAGCCTAGCCTTGTGCTTCCGCACAGTCCGGGTTTCCGCTTCC
CTCCCGGGCGCCGGGTGAGAGGGAGCGAGGCCGAACCTCGGTCCCGGCCGCCGACGCCAT
GTGGCCCCCAGACCCAAACCCAGAGCCCGACCCGGACCCCGGGCCCGCCAGCCGCTCCCC
GCCCCGCACGGCCGTCTCCGGGCTCTGCGCCCTCCTGCCGGCGCCCGCCTTCCTCTGCTC
GCTCAAAGGCCGCCTCCTGCTGGCGGAGTCGGGTCTCTCATTCATCATCTTCGTCTGCTA
TGTGGCGTCCTCAGCATCTGCCTTCCTCACAGCGCCTCTGTTAGAGTTCCTGCTGGCCCT
CTTCTTCCTCTTTGCTGATGCCATGCAGCTGAATGACAAGTGGCAGGGCCTGTGCTGGCC
CATGATGGACTTCCTACGCTGTGTCACAGCCGCTCTCATTTACTTCGCCATCTCTATCAC
AGCTGTCGCCAAATACTCAGACGGGGCTTCCAAAGCAGCTGGGGTCTTTGGCTTCTTTGC
CACCATCGTGTTTGCCGTTGACTTCTACCTGATCTTCAACGAGGTGGCCAAATTCCTCAA
ACAAGGGAGCTCAGCAGATGAGACCACAGCTAACAAGGCAGAAGAAGAGAACTCCGACTC
CGACTCCGACTGAAGGCCTGACCTGCCCTGGCCACCTGAGCCACGCAGGCCTCCACTCCT
CCACTCTGACCAGGCTGGCCAGGGGACCGTGCATGGTGGGAGGGAGCCTGTGACTTCTCA
AGCTGCAGTGGGAGTTGCTGGTGGAGCGGGCCTCCTCGCAGCCCCAAGGTGCCGTTCCTG
AGCTTAGCAAATGAGACTGCAGCCCTTGCCTTAGCACTGTCCAACCTCGCTGCTCCTGAG
GGCATCGTCACTATTCCGCCACTTCTCATTTCTGTCCTACAGACCTTAAGCCCTTTAACT
TCTCTGCCAAAAATAAGCACAAGGGGACAAGGCAGATGAAGCCCTGTTACCCCATCATAG
GAAGTGTTTCCTGCTGCAGGGAGTTGGGGCAGATGACAGAAAATACCGCGGGGCCAACCC
ACCCGGCCCCAGTGGTTTTTCATCTGCCTCTGGTGCCCCTGGTCATGCCAGGCACTTTGT
CAAGAACGATCCTTCCGAGATTTTTCTGTTCAAGGAGCACCAGTTTCCTCTTGTTCTTGA
AACAGAAGACTGACCTTTGCCCTATGACCTAGGAGAGAGTGGGGCCCAGGGCCCTTAACT
GACTCCTCACACCCTTGGAGACCGTGTCTTCAGGTGACATGATTATTCTGGGTCTAAAAC
TGTTTCAAAGAATAGCTTGTGAACTCGCTGACCAGATCCAAAAGATTCGAGGGCACCAAA
TGACACAGTAGTAGTGACAGTGCCCAGGGCAGCTGGGCAGGCCCAGCCAAACCTTCTTTC
CCTGGGTGCCAGTGAGCAGTGGGAGGCTCTCGGCCCTCAGGACAGTGTGCTTCTGGACAC
CAGAGCAGGTGCCCTGACCCTCACAAAGGGTGAAATGTGCCTTCTGTGTTCACCTAAGGA
CCATATACTGAGCATCTATCTTCAGTGGGATTTTTTTACTTTATATATATATATATATTT
TTTTTTTACACAAAGCAGCTTATTAAATGGTATTTCCCTGTGATCCAAGAGGCCTCGTGA
ATGAACCAGAATCCTGAACCTGTGTTTGGGGCATTTGTAACCTTTGTTCTTCTCTTGCAT
GTGAATCTCCTACCCTGAAAAAAGCTGTAAGGGATTAAACCAGACTGAATTCTTAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCCCCGCGCCCTACTAGCCTAGCCTTGTGCTTCCGCACAGTCCGGGTTTCCGCTTCC
CTCCCGGGCGCCGGGTGAGAGGGAGCGAGGCCGAACCTCGGTCCCGGCCGCCGACGCCAT
GTGGCCCCCAGACCCAAACCCAGAGCCCGACCCGGACCCCGGGCCCGCCAGCCGCTCCCC
GCCCCGCACGGCCGTCTCCGGGCTCTGCGCCCTCCTGCCGGCGCCCGCCTTCCTCTGCTC
GCTCAAAGGCCGCCTCCTGCTGGCGGAGTCGGGTCTCTCATTCATCATCTTCGTCTGCTA
TGTGGCGTCCTCAGCATCTGCCTTCCTCACAGCGCCTCTGTTAGAGTTCCTGCTGGCCCT
CTTCTTCCTCTTTGCTGATGCCATGCAGCTGAATGACAAGTGGCAGGGCCTGTGCTGGCC
CATGATGGACTTCCTACGCTGTGTCACAGCCGCTCTCATTTACTTCGCCATCTCTATCAC
AGCTGTCGCCAAATACTCAGACGGGGCTTCCAAAGCAGCTGGGGTCTTTGGCTTCTTTGC
CACCATCGTGTTTGCCGTTGACTTCTACCTGATCTTCAACGAGGTGGCCAAATTCCTCAA
ACAAGGGAGCTCAGCAGATGAGACCACAGCTAACAAGGCAGAAGAAGAGAACTCCGACTC
CGACTCCGACTGAAGGCCTGACCTGCCCTGGCCACCTGAGCCACGCAGGCCTCCACTCCT
CCACTCTGACCAGGCTGGCCAGGGGACCGTGCATGGTGGGAGGGAGCCTGTGACTTCTCA
AGCTGCAGTGGGAGTTGCTGGTGGAGCGGGCCTCCTCGCAGCCCCAAGGTGCCGTTCCTG
AGCTTAGCAAATGAGACTGCAGCCCTTGCCTTAGCACTGTCCAACCTCGCTGCTCCTGAG
GGCATCGTCACTATTCCGCCACTTCTCATTTCTGTCCTACAGACCTTAAGCCCTTTAACT
TCTCTGCCAAAAATAAGCACAAGGGGACAAGGCAGATGAAGCCCTGTTACCCCATCATAG
GAAGTGTTTCCTGCTGCAGGGAGTTGGGGCAGATGACAGAAAATACCGCGGGGCCAACCC
ACCCGGCCCCAGTGGTTTTTCATCTGCCTCTGGTGCCCCTGGTCATGCCAGGCACTTTGT
CAAGAACGATCCTTCCGAGATTTTTCTGTTCAAGGAGCACCAGTTTCCTCTTGTTCTTGA
AACAGAAGACTGACCTTTGCCCTATGACCTAGGAGAGAGTGGGGCCCAGGGCCCTTAACT
GACTCCTCACACCCTTGGAGACCGTGTCTTCAGGTGACATGATTATTCTGGGTCTAAAAC
TGTTTCAAAGAATAGCTTGTGAACTCGCTGACCAGATCCAAAAGATTCGAGGGCACCAAA
TGACACAGTAGTAGTGACAGTGCCCAGGGCAGCTGGGCAGGCCCAGCCAAACCTTCTTTC
CCTGGGTGCCAGTGAGCAGTGGGAGGCTCTCGGCCCTCAGGACAGTGTGCTTCTGGACAC
CAGAGCAGGTGCCCTGACCCTCACAAAGGGTGAAATGTGCCTTCTGTGTTCACCTAAGGA
CCATATACTGAGCATCTATCTTCAGTGGGATTTTTTTACTTTATATATATATATATATTT
TTTTTTTACACAAAGCAGCTTATTAAATGGTATTTCCCTGTGATCCAAGAGGCCTCGTGA
ATGAACCAGAATCCTGAACCTGTGTTTGGGGCATTTGTAACCTTTGTTCTTCTCTTGCAT
GTGAATCTCCTACCCTGAAAAAAGCTGTAAGGGATTAAACCAGACTGAATTCTTAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               CKLF3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CKLF3_HUMAN

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               283-389, - strand, RNAz p=0.795367
               

               
               906-1022, - strand, RNAz p=0.940258
               

               
               1049-1156, - strand, RNAz p=0.86767
               

               
               1348-1503, - strand, RNAz p=0.800097

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               283-389, - strand, RNAz p=0.795367
               

               
               906-1022, - strand, RNAz p=0.940258
               

               
               1049-1156, - strand, RNAz p=0.86767
               

               
               1348-1503, - strand, RNAz p=0.800097

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               271-428, gnl|bosTau2|chr18 (29965463-29965620)
               

               
               271-428, gnl|canFam2|chr5 (85672545-85672350)
               

               
               271-428, gnl|danRer3|chrNA (70186856-70187022)
               

               
               271-428, gnl|dasNov1|scaffold_236726 (487-654)
               

               
               271-428, gnl|fr1|chrUn (209177533-209177350)
               

               
               271-428, gnl|galGal2|chrUn (25149708-25149880)
               

               
               271-428, gnl|hg17|chr16 (65199696-65199900)
               

               
               271-428, gnl|Hg17|chr16 (65199712-65199869)
               

               
               271-428, gnl|mm7|chr8 (102944254-102944450)
               

               
               271-428, gnl|Mm7|chr8 (102944261-102944418)
               

               
               271-428, gnl|monDom2|scaffold_23 (21013106-21012925)
               

               
               271-428, gnl|panTro1|chr18 (59439669-59439873)
               

               
               271-428, gnl|rheMac2|chr20 (64875658-64875862)
               

               
               271-428, gnl|rn3|chr19 (583460-583262)
               

               
               271-428, gnl|tetNig1|chr5 (7804675-7804859)
               


               
               643-1792, gnl|bosTau2|chr18 (29969091-29970233)
               

               
               643-1792, gnl|Hg17|chr16 (65204011-65205153)
               

               
               643-1792, gnl|Mm7|chr8 (102947234-102948175)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               271-428, gnl|bosTau2|chr18 (29965463-29965620)
               

               
               271-428, gnl|canFam2|chr5 (85672545-85672350)
               

               
               271-428, gnl|danRer3|chrNA (70186856-70187022)
               

               
               271-428, gnl|dasNov1|scaffold_236726 (487-654)
               

               
               271-428, gnl|fr1|chrUn (209177533-209177350)
               

               
               271-428, gnl|galGal2|chrUn (25149708-25149880)
               

               
               271-428, gnl|hg17|chr16 (65199696-65199900)
               

               
               271-428, gnl|Hg17|chr16 (65199712-65199869)
               

               
               271-428, gnl|mm7|chr8 (102944254-102944450)
               

               
               271-428, gnl|Mm7|chr8 (102944261-102944418)
               

               
               271-428, gnl|monDom2|scaffold_23 (21013106-21012925)
               

               
               271-428, gnl|panTro1|chr18 (59439669-59439873)
               

               
               271-428, gnl|rheMac2|chr20 (64875658-64875862)
               

               
               271-428, gnl|rn3|chr19 (583460-583262)
               

               
               271-428, gnl|tetNig1|chr5 (7804675-7804859)
               


               
               643-1792, gnl|bosTau2|chr18 (29969091-29970233)
               

               
               643-1792, gnl|Hg17|chr16 (65204011-65205153)
               

               
               643-1792, gnl|Mm7|chr8 (102947234-102948175)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

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               cga (0.279096)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	283-389, - strand, RNAz p=0.795367
	906-1022, - strand, RNAz p=0.940258
	1049-1156, - strand, RNAz p=0.86767
	1348-1503, - strand, RNAz p=0.800097

	271-428, gnl\|bosTau2\|chr18 (29965463-29965620)
	271-428, gnl\|canFam2\|chr5 (85672545-85672350)
	271-428, gnl\|danRer3\|chrNA (70186856-70187022)
	271-428, gnl\|dasNov1\|scaffold_236726 (487-654)
	271-428, gnl\|fr1\|chrUn (209177533-209177350)
	271-428, gnl\|galGal2\|chrUn (25149708-25149880)
	271-428, gnl\|hg17\|chr16 (65199696-65199900)
	271-428, gnl\|Hg17\|chr16 (65199712-65199869)
	271-428, gnl\|mm7\|chr8 (102944254-102944450)
	271-428, gnl\|Mm7\|chr8 (102944261-102944418)
	271-428, gnl\|monDom2\|scaffold_23 (21013106-21012925)
	271-428, gnl\|panTro1\|chr18 (59439669-59439873)
	271-428, gnl\|rheMac2\|chr20 (64875658-64875862)
	271-428, gnl\|rn3\|chr19 (583460-583262)
	271-428, gnl\|tetNig1\|chr5 (7804675-7804859)

	643-1792, gnl\|bosTau2\|chr18 (29969091-29970233)
	643-1792, gnl\|Hg17\|chr16 (65204011-65205153)
	643-1792, gnl\|Mm7\|chr8 (102947234-102948175)

	cga (0.279096)
	eru (0.240096)
	ece (0.229305)
	hea (0.204499)
	col (0.195008)
	fty (0.17584)
	mcp (0.170648)
	hyp (0.142837)
	ssp (0.13552)
	pla (0.133672)
	nmm (0.132802)
	ese (0.126502)
	eep (0.122564)
	jca (0.11396)