Ss1.1-Pig4-TMW8042C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAACTTCATCTGAAGAAGTTTTGCTGATTGTAAAGAAGGTGCGACAAAAGAAGCAAGA TGGAGCTCTATACCTCATGGCAGAAAGAATTGCTTGGGCACCTGAAGGCAAAGATAGATT TACCATCAGCCATATGTATGCGGACATTAAATGCCAGAAAATCAGTCCAGAAGGAAAAGC CAAAATTCAGCTTCAGCTGGTCCTGCATGCAGGGGACACAACTAACTTCCATTTTTCCAA TGAAAGCACAGCAGTGAAAGAGCGAGATGCAGTGAAAGACCTTCTTCAGCAGTTGCTGCC GAAATTCAAGAGGAAAGCAAATAAAGAACTAGAAGAGAAAAACAGAATGCTGCAAGAAGA TCCTGTTTTGTTTCAGCTTTATAAAGACCTTGTTGTGAGTCAAGTGATCAGTGCTGAGGA ATTCTGGGCCAATCGTTTAAATGTGAATGCAACAGAGAGTTCTTCTACATCTAATCATAA GCAGGATGTTGGCATTTCTGCAGCATTTCTGGCTGATGTCCGGCCCCAAACAGATGGATG TAATGGTCTGAGGTACAATTTAACATCTGATATCATTGAGTCCATATTTAGGACCTATCC AGCAGTGAAAATGAAATATGCAGAAAATGTTCCCCACAACATGACAGAAAAGGAATTCTG GACGCGTTTTTTTTCAGTCCCATTATTTTCATAGGGACCGGCTGAATACAGGATCAAAGG ACCTCTTTGCAGAATGTGCCAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAACTTCATCTGAAGAAGTTTTGCTGATTGTAAAGAAGGTGCGACAAAAGAAGCAAGA TGGAGCTCTATACCTCATGGCAGAAAGAATTGCTTGGGCACCTGAAGGCAAAGATAGATT TACCATCAGCCATATGTATGCGGACATTAAATGCCAGAAAATCAGTCCAGAAGGAAAAGC CAAAATTCAGCTTCAGCTGGTCCTGCATGCAGGGGACACAACTAACTTCCATTTTTCCAA TGAAAGCACAGCAGTGAAAGAGCGAGATGCAGTGAAAGACCTTCTTCAGCAGTTGCTGCC GAAATTCAAGAGGAAAGCAAATAAAGAACTAGAAGAGAAAAACAGAATGCTGCAAGAAGA TCCTGTTTTGTTTCAGCTTTATAAAGACCTTGTTGTGAGTCAAGTGATCAGTGCTGAGGA ATTCTGGGCCAATCGTTTAAATGTGAATGCAACAGAGAGTTCTTCTACATCTAATCATAA GCAGGATGTTGGCATTTCTGCAGCATTTCTGGCTGATGTCCGGCCCCAAACAGATGGATG TAATGGTCTGAGGTACAATTTAACATCTGATATCATTGAGTCCATATTTAGGACCTATCC AGCAGTGAAAATGAAATATGCAGAAAATGTTCCCCACAACATGACAGAAAAGGAATTCTG GACGCGTTTTTTTTCAGTCCCATTATTTTCATAGGGACCGGCTGAATACAGGATCAAAGG ACCTCTTTGCAGAATGTGCCAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 596-712, - strand, RNAz p=0.662414 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 596-712, - strand, RNAz p=0.662414 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 153-345, gnl|bosTau2|chr29 (18475986-18475794) | |
| 153-345, gnl|canFam2|chr21 (43972451-43972638) | |
| 153-345, gnl|canFam2|chr21 (43972432-43972644) | |
| 153-345, gnl|danRer3|chr24 (13520675-13520862) | |
| 153-345, gnl|danRer3|chr24 (13520656-13520868) | |
| 153-345, gnl|dasNov1|scaffold_3006 (49887-49688) | |
| 153-345, gnl|dasNov1|scaffold_7177 (3535-3323) | |
| 153-345, gnl|echTel1|scaffold_206600 (2339-2163) | |
| 153-345, gnl|echTel1|scaffold_320861 (42829-42617) | |
| 153-345, gnl|fr1|chrUn (153227242-153227427) | |
| 153-345, gnl|fr1|chrUn (153227227-153227435) | |
| 153-345, gnl|galGal2|chr5 (10079552-10079739) | |
| 153-345, gnl|galGal2|chr5 (10079545-10079745) | |
| 153-345, gnl|hg17|chr11 (18313861-18314073) | |
| 153-345, gnl|Hg17|chr11 (18313877-18314069) | |
| 153-345, gnl|hg17|chr18 (56014924-56015108) | |
| 153-345, gnl|mm7|chr7 (42980021-42980208) | |
| 153-345, gnl|mm7|chr7 (42980003-42980214) | |
| 153-345, gnl|Mm7|chr7 (42980018-42980210) | |
| 153-345, gnl|monDom2|scaffold_10 (53182494-53182307) | |
| 153-345, gnl|monDom2|scaffold_10 (53182513-53182301) | |
| 153-345, gnl|oryCun1|scaffold_172798 (107687-107899) | |
| 153-345, gnl|oryCun1|scaffold_174302 (50253-50433) | |
| 153-345, gnl|panTro1|chr17 (52897264-52897448) | |
| 153-345, gnl|panTro1|chr9 (18546418-18546630) | |
| 153-345, gnl|rheMac2|chr14 (53562685-53562473) | |
| 153-345, gnl|rheMac2|chr18 (53463708-53463895) | |
| 153-345, gnl|rn3|chr1 (97439353-97439540) | |
| 153-345, gnl|rn3|chr1 (97439335-97439546) | |
| 153-345, gnl|tetNig1|chr13 (11000840-11000653) | |
| 153-345, gnl|tetNig1|chr13 (11000853-11000647) | |
| 153-345, gnl|xenTro1|scaffold_1818 (45939-45752) | |
| 153-345, gnl|xenTro1|scaffold_1818 (45956-45747) | |
| 596-744, gnl|bosTau2|chr29 (18472020-18471874) | |
| 596-744, gnl|canFam2|chr21 (43976086-43976239) | |
| 596-744, gnl|danRer3|chr24 (13523367-13523516) | |
| 596-744, gnl|dasNov1|scaffold_3006 (49426-49276) | |
| 596-744, gnl|echTel1|scaffold_206600 (1914-1760) | |
| 596-744, gnl|fr1|chrUn (153228067-153228214) | |
| 596-744, gnl|galGal2|chr5 (10084343-10084496) | |
| 596-744, gnl|Hg17|chr11 (18319375-18319521) | |
| 596-744, gnl|hg17|chr18 (56015369-56015522) | |
| 596-744, gnl|loxAfr1|scaffold_1205 (53403-53250) | |
| 596-744, gnl|mm7|chr7 (42984736-42984889) | |
| 596-744, gnl|Mm7|chr7 (42984726-42984875) | |
| 596-744, gnl|monDom2|scaffold_10 (53178321-53178168) | |
| 596-744, gnl|oryCun1|scaffold_174302 (50694-50847) | |
| 596-744, gnl|panTro1|chr17 (52897709-52897862) | |
| 596-744, gnl|rheMac2|chr18 (53464128-53464264) | |
| 596-744, gnl|rn3|chr1 (97444391-97444544) | |
| 596-744, gnl|tetNig1|chr13 (11000014-10999867) | |
| 596-744, gnl|xenTro1|scaffold_1818 (44343-44191) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-345, gnl|bosTau2|chr29 (18475986-18475794) | |
| 153-345, gnl|canFam2|chr21 (43972451-43972638) | |
| 153-345, gnl|canFam2|chr21 (43972432-43972644) | |
| 153-345, gnl|danRer3|chr24 (13520675-13520862) | |
| 153-345, gnl|danRer3|chr24 (13520656-13520868) | |
| 153-345, gnl|dasNov1|scaffold_3006 (49887-49688) | |
| 153-345, gnl|dasNov1|scaffold_7177 (3535-3323) | |
| 153-345, gnl|echTel1|scaffold_206600 (2339-2163) | |
| 153-345, gnl|echTel1|scaffold_320861 (42829-42617) | |
| 153-345, gnl|fr1|chrUn (153227242-153227427) | |
| 153-345, gnl|fr1|chrUn (153227227-153227435) | |
| 153-345, gnl|galGal2|chr5 (10079552-10079739) | |
| 153-345, gnl|galGal2|chr5 (10079545-10079745) | |
| 153-345, gnl|hg17|chr11 (18313861-18314073) | |
| 153-345, gnl|Hg17|chr11 (18313877-18314069) | |
| 153-345, gnl|hg17|chr18 (56014924-56015108) | |
| 153-345, gnl|mm7|chr7 (42980021-42980208) | |
| 153-345, gnl|mm7|chr7 (42980003-42980214) | |
| 153-345, gnl|Mm7|chr7 (42980018-42980210) | |
| 153-345, gnl|monDom2|scaffold_10 (53182494-53182307) | |
| 153-345, gnl|monDom2|scaffold_10 (53182513-53182301) | |
| 153-345, gnl|oryCun1|scaffold_172798 (107687-107899) | |
| 153-345, gnl|oryCun1|scaffold_174302 (50253-50433) | |
| 153-345, gnl|panTro1|chr17 (52897264-52897448) | |
| 153-345, gnl|panTro1|chr9 (18546418-18546630) | |
| 153-345, gnl|rheMac2|chr14 (53562685-53562473) | |
| 153-345, gnl|rheMac2|chr18 (53463708-53463895) | |
| 153-345, gnl|rn3|chr1 (97439353-97439540) | |
| 153-345, gnl|rn3|chr1 (97439335-97439546) | |
| 153-345, gnl|tetNig1|chr13 (11000840-11000653) | |
| 153-345, gnl|tetNig1|chr13 (11000853-11000647) | |
| 153-345, gnl|xenTro1|scaffold_1818 (45939-45752) | |
| 153-345, gnl|xenTro1|scaffold_1818 (45956-45747) | |
| 596-744, gnl|bosTau2|chr29 (18472020-18471874) | |
| 596-744, gnl|canFam2|chr21 (43976086-43976239) | |
| 596-744, gnl|danRer3|chr24 (13523367-13523516) | |
| 596-744, gnl|dasNov1|scaffold_3006 (49426-49276) | |
| 596-744, gnl|echTel1|scaffold_206600 (1914-1760) | |
| 596-744, gnl|fr1|chrUn (153228067-153228214) | |
| 596-744, gnl|galGal2|chr5 (10084343-10084496) | |
| 596-744, gnl|Hg17|chr11 (18319375-18319521) | |
| 596-744, gnl|hg17|chr18 (56015369-56015522) | |
| 596-744, gnl|loxAfr1|scaffold_1205 (53403-53250) | |
| 596-744, gnl|mm7|chr7 (42984736-42984889) | |
| 596-744, gnl|Mm7|chr7 (42984726-42984875) | |
| 596-744, gnl|monDom2|scaffold_10 (53178321-53178168) | |
| 596-744, gnl|oryCun1|scaffold_174302 (50694-50847) | |
| 596-744, gnl|panTro1|chr17 (52897709-52897862) | |
| 596-744, gnl|rheMac2|chr18 (53464128-53464264) | |
| 596-744, gnl|rn3|chr1 (97444391-97444544) | |
| 596-744, gnl|tetNig1|chr13 (11000014-10999867) | |
| 596-744, gnl|xenTro1|scaffold_1818 (44343-44191) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ecc (0.115035) | |
| cbl (0.114797) |