Non-Coding RNA Search

Ss1.1-Pig4-TMW8042C05.5

Sequence:


               
               CAGATCACGATGGGCAGTCATGGCATGAGAAGGCCCCCTCCCGTCAATCCCGGCAGTGTC
ACCAGTGACCTGTATGACTCTTGTGTGGATAATTTCTTTGAGCCTCAGATTTTTGTCATT
TTTAATGATGACCAGAGTTACCCTTATTTTGTTATCCAATATGAAGAAGTCAGTAACACT
GTTTCCATTTGAAAAACCTTGGTACTGCTAAATTATTTGTATGAACTCAATCCAGCATTT
GTAGCAGGTTTTGGATGGGTGGGACAGCGTGGGGGACAGCATTGGACATTATTAGGGCAC
TTTTAAGACCCATTTTTTTTAAGTGCTAGAAAGTGAAAAAAATTTTTTTAAAGAAAAAAC
ACAGGTTTTAAAATGACCACTTATTATTATTCTTTAATTATTTACTAATTGTTGTTAGTG
TACTCAGTGTGGAAAAGACTACAGATTGCATACTCTTTTCATTCACACTTGTACATATAG
GCAGCAATGTTATTAGAAGCATTTTTTAGAAGAGAAACTGAACAACCTAACTCATGAAAT
GTGACTTAAGCCTGGTAGAAGTTTGGCCAAATAAAATGCAGGCTGTGAGCAAAGTGAGGA
TTCTATTTACAAAGATAAACCTGCCTGGAACTAGTACTACCATACTTACTCCCCATCCGA
AGCATCACTGCTGTGGTATAAAAGTTTCTGAAATTCTGGTGGGTGGAGAGAAATTTCTGT
TTCTGTCAGTAGGACTGAGCTGTATCACCCAACCAGAGAGCATCAGTGACTTTAACTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATCACGATGGGCAGTCATGGCATGAGAAGGCCCCCTCCCGTCAATCCCGGCAGTGTC
ACCAGTGACCTGTATGACTCTTGTGTGGATAATTTCTTTGAGCCTCAGATTTTTGTCATT
TTTAATGATGACCAGAGTTACCCTTATTTTGTTATCCAATATGAAGAAGTCAGTAACACT
GTTTCCATTTGAAAAACCTTGGTACTGCTAAATTATTTGTATGAACTCAATCCAGCATTT
GTAGCAGGTTTTGGATGGGTGGGACAGCGTGGGGGACAGCATTGGACATTATTAGGGCAC
TTTTAAGACCCATTTTTTTTAAGTGCTAGAAAGTGAAAAAAATTTTTTTAAAGAAAAAAC
ACAGGTTTTAAAATGACCACTTATTATTATTCTTTAATTATTTACTAATTGTTGTTAGTG
TACTCAGTGTGGAAAAGACTACAGATTGCATACTCTTTTCATTCACACTTGTACATATAG
GCAGCAATGTTATTAGAAGCATTTTTTAGAAGAGAAACTGAACAACCTAACTCATGAAAT
GTGACTTAAGCCTGGTAGAAGTTTGGCCAAATAAAATGCAGGCTGTGAGCAAAGTGAGGA
TTCTATTTACAAAGATAAACCTGCCTGGAACTAGTACTACCATACTTACTCCCCATCCGA
AGCATCACTGCTGTGGTATAAAAGTTTCTGAAATTCTGGTGGGTGGAGAGAAATTTCTGT
TTCTGTCAGTAGGACTGAGCTGTATCACCCAACCAGAGAGCATCAGTGACTTTAACTGTT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               39-158, - strand, RNAz p=0.644192
               

               
               356-511, - strand, RNAz p=0.908134
               

               
               646-780, + strand, RNAz p=0.972825

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-158, - strand, RNAz p=0.644192
               

               
               356-511, - strand, RNAz p=0.908134
               

               
               646-780, + strand, RNAz p=0.972825

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               76-173, + strand, RNAmicro p=0.992031
               

               
               404-533, - strand, RNAmicro p=0.990332
               

               
               412-496, + strand, RNAmicro p=0.980112

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               76-173, + strand, RNAmicro p=0.992031
               

               
               404-533, - strand, RNAmicro p=0.990332
               

               
               412-496, + strand, RNAmicro p=0.980112

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015508, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015508, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr1 (70848839-70849607)
               

               
               1-780, gnl|Hg17|chr3 (157905430-157906199)
               

               
               1-780, gnl|Mm7|chr3 (65654446-65655212)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr1 (70848839-70849607)
               

               
               1-780, gnl|Hg17|chr3 (157905430-157906199)
               

               
               1-780, gnl|Mm7|chr3 (65654446-65655212)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ste (0.135208)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)

	39-158, - strand, RNAz p=0.644192
	356-511, - strand, RNAz p=0.908134
	646-780, + strand, RNAz p=0.972825

	76-173, + strand, RNAmicro p=0.992031
	404-533, - strand, RNAmicro p=0.990332
	412-496, + strand, RNAmicro p=0.980112

	1-780, gnl\|bosTau2\|chr1 (70848839-70849607)
	1-780, gnl\|Hg17\|chr3 (157905430-157906199)
	1-780, gnl\|Mm7\|chr3 (65654446-65655212)