Non-Coding RNA Search

Ss1.1-Pig4-TMW8042C06.5

Sequence:


               
               TTTTTCTTTTCGTTTTTTTGATGTGTTGGGTTTTGGTTTTGAGTCTCTTTTTTTTTTTAA
TGAATGAAATTTACTGAGGAAAAAAATATGTGAAGGACCTTCACTCTAAGATGTTATATT
TTTCTTAAAAAATAACTCCAAGTAGGGGTACCACTGAATCTGTACAGAGCCGTACAAACC
GAAGTTCTGCCTCTGATGTATTTTGTGAGTTTGTTTCTTTGAATTTTCATTTTCCGGTTA
CTTTTCCTTGCATACAAATAAGCATATAAAAATGGCAACAAACTGCACATGATTTCAAGA
ATATTAAAAAGTCTTTTAAAAGTATTGCCAAACATTAATGTTGATTTCTAGTTATTTATT
CTGGGAATGTATAGTATTTGAAAACAGAAATTGGTACCTTGCACACATCATCTGTAAGCT
GTTTGGTTTAAAATACTGTAGATAATTAACCAAGGTAGAATGACCTTGTAATGTAACTGC
TCTTGGGCAATATTCTCTGTACATATTAGCGACAACAGATTGGATTTTATGTTGACATTT
GTTTGGTTATAGTGCAATATATTTTGTATGCAAGCAGTTTCAATAAAGTTTGATCTTCCT
CTGCTAAATTGACGTTGACGCAATCCTTACAAATGATTGCTTTTAAAATTTTAAGATAGG
AGAAGAAATCTATAGAAAGTGTTCTGTTACAAAATGTAACTGTTACCTTGGAAATTTCAC
ATGTCATAGGAAGTTAGCCGTTACCTACCAACTTTCAAGAACTTGATCTTGTTTAATAAG
GTGAAAAAATATCAACAAAATGGTACAAAAGTACATTGTGCCATTACAATATGCACTGAG
TCTCTTTTTTACAAAGGCTGAATTCAGCAAGGCGCTAACTTGCTTAAATGTGAATTACTA
ACTTCTAAAACTGTAATTTGAGTCACATGTTTTCAAATGGAGTTGAAGTTGATTCATATT
ACAATATTTGTGTGCTAAACGTGTATGTTTTTCAGTTCAAAGTCATGATGTTTTTAAAAA
TCTTATTAAAGTTTCAAAAATCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTCTTTTCGTTTTTTTGATGTGTTGGGTTTTGGTTTTGAGTCTCTTTTTTTTTTTAA
TGAATGAAATTTACTGAGGAAAAAAATATGTGAAGGACCTTCACTCTAAGATGTTATATT
TTTCTTAAAAAATAACTCCAAGTAGGGGTACCACTGAATCTGTACAGAGCCGTACAAACC
GAAGTTCTGCCTCTGATGTATTTTGTGAGTTTGTTTCTTTGAATTTTCATTTTCCGGTTA
CTTTTCCTTGCATACAAATAAGCATATAAAAATGGCAACAAACTGCACATGATTTCAAGA
ATATTAAAAAGTCTTTTAAAAGTATTGCCAAACATTAATGTTGATTTCTAGTTATTTATT
CTGGGAATGTATAGTATTTGAAAACAGAAATTGGTACCTTGCACACATCATCTGTAAGCT
GTTTGGTTTAAAATACTGTAGATAATTAACCAAGGTAGAATGACCTTGTAATGTAACTGC
TCTTGGGCAATATTCTCTGTACATATTAGCGACAACAGATTGGATTTTATGTTGACATTT
GTTTGGTTATAGTGCAATATATTTTGTATGCAAGCAGTTTCAATAAAGTTTGATCTTCCT
CTGCTAAATTGACGTTGACGCAATCCTTACAAATGATTGCTTTTAAAATTTTAAGATAGG
AGAAGAAATCTATAGAAAGTGTTCTGTTACAAAATGTAACTGTTACCTTGGAAATTTCAC
ATGTCATAGGAAGTTAGCCGTTACCTACCAACTTTCAAGAACTTGATCTTGTTTAATAAG
GTGAAAAAATATCAACAAAATGGTACAAAAGTACATTGTGCCATTACAATATGCACTGAG
TCTCTTTTTTACAAAGGCTGAATTCAGCAAGGCGCTAACTTGCTTAAATGTGAATTACTA
ACTTCTAAAACTGTAATTTGAGTCACATGTTTTCAAATGGAGTTGAAGTTGATTCATATT
ACAATATTTGTGTGCTAAACGTGTATGTTTTTCAGTTCAAAGTCATGATGTTTTTAAAAA
TCTTATTAAAGTTTCAAAAATCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               768-964, + strand, RNAz p=0.868109

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               768-964, + strand, RNAz p=0.868109

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               875-980, + strand, RNAmicro p=0.99403

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               875-980, + strand, RNAmicro p=0.99403

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002024, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002024, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               2-385, gnl|bosTau2|chrX (10778208-10777818)
               


               
               570-1044, gnl|bosTau2|chr4 (61404491-61404967)
               

               
               570-1044, gnl|Hg17|chrX (146737666-146738130)
               

               
               570-1044, gnl|Mm7|chrX (64112035-64112489)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-385, gnl|bosTau2|chrX (10778208-10777818)
               


               
               570-1044, gnl|bosTau2|chr4 (61404491-61404967)
               

               
               570-1044, gnl|Hg17|chrX (146737666-146738130)
               

               
               570-1044, gnl|Mm7|chrX (64112035-64112489)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               fco (0.157208)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	2-385, gnl\|bosTau2\|chrX (10778208-10777818)

	570-1044, gnl\|bosTau2\|chr4 (61404491-61404967)
	570-1044, gnl\|Hg17\|chrX (146737666-146738130)
	570-1044, gnl\|Mm7\|chrX (64112035-64112489)

	aor (0.195274)
	sag (0.182715)
	fhi (0.169578)
	nje (0.16592)
	fco (0.157208)
	lnt (0.142308)
	csk (0.140746)
	kid (0.129735)
	spc (0.113366)
	eje (0.0988338)