Non-Coding RNA Search

Ss1.1-Pig4-TMW8042C18.3

Sequence:


               
               GCTGAACTTGGACGGCCAGCACTTGGAGGATCGGCACGGCAAGAGGAAGAGAAGGAGCTC
CAGCTCTCGGTCCATTAATAAGAAGCCCAAGGCCCTGGAGAACCCCCTGCAGGGGGTGGA
TGGGACACCCGAGAGCCTGGCAACCTCCAGCCCACCTCCCCGAAACCAGAACAGCCGATG
CCCAGAGGAGAAACCCCAGGAGTCAAGCCCTGTAAAGGGCCCAGAGGGCCCCTCCCAGCT
TCTGGGGTCCCTGGAGCCCTGCCCTGGTCTGCCCAGGGAGGGGGTGCGGTGCAGCCAGGA
GAGTGGCAAAGTAGAGAATGGGGTCCAGGGGCCGTGTAAGCCACGCTGGAACTTTGAGCA
AATCTCCTTCCCCAACATGGCTTCAGACGGCCGCCATACCCTCCTGCTTGCCCCCGCGCC
AGAGCTGCTCCCGGCCAATGTCGCCGGGCGGGAGACGGACGCCGAGCCCTGGTGCCAGAA
GCTCAACCAGCGGAAGGAGAAGCTCTCCAGGCGGGAACGGGAGCAGCAGGCAGAGGCCCA
GCACTTCCGGGAGGACGTGAACTCAGATCCCGAGGTGCAGCGCTGCTCCAGCTGGCAGGA
GTACAAGCAGCTGCTGCAGAGGCGGCACCTGCAGAAGACCCAGAGCCGCCCCCCACACCT
CTGGGACCAGGCTGTCACCCCCTTGCTGAGTCCTGGTCAAGCAGACTCCCCAGCCACAGC
CCTTCAGCTTATCTCTGTGCTGCAGACAACACACCTTGCCGATGGAGGTGCCCGGCTGCT
CGAGAAGTCTGGAGGCTTGGAGATCAGCTTTGATGTCTACCAGGCTGACGCTGTGGCCAC
GTTCCGAAAGAATAACCCCGGCAAGCCCTACGTTCGGATGTGCATTAGTGGATTTGATGA
GCCAGTCCCAGACCTCTGCACCCTCAAGCGGTTGTCCTACCAGAGCGGGGATGTTCCTCT
GATCTTTGCCCTGGTGGATCACGGAGACATCTCCTTCTACAGCGTCAGGGACTTCACGCT
GCCCAAGGATGTGGAACACTGACCACGCAGCTCTGGCAGGGCCTGGGGTCTGCTCTGGGG
GACCTGGACTGTCTACTCTCAGGGACCATCTCAGTTGCCTCCTACACCCAGACTCTGATC
TGTAGCTTCAGGGGCTAGTCTGGGCCTTGGCCCCGGGTGTCTGGCGCTTGCAGGAGAGCA
AAGCCTTGCCCCCTGCCTGGCTGCTGCAGCGCTTCCAAGCCCCACGTCTGAGAGTGCTGC
TTTGCAGTGATCCCCTGCAAACTCAGGACTAGATTTCAGAGACCCAGCCAGGTGGGGCAG
AAGAGAGGACTCTGTGCCTTTAATTGAGAGGGTGCCTGCTTCAAGCGATACAGCCAAAGC
CATTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGAACTTGGACGGCCAGCACTTGGAGGATCGGCACGGCAAGAGGAAGAGAAGGAGCTC
CAGCTCTCGGTCCATTAATAAGAAGCCCAAGGCCCTGGAGAACCCCCTGCAGGGGGTGGA
TGGGACACCCGAGAGCCTGGCAACCTCCAGCCCACCTCCCCGAAACCAGAACAGCCGATG
CCCAGAGGAGAAACCCCAGGAGTCAAGCCCTGTAAAGGGCCCAGAGGGCCCCTCCCAGCT
TCTGGGGTCCCTGGAGCCCTGCCCTGGTCTGCCCAGGGAGGGGGTGCGGTGCAGCCAGGA
GAGTGGCAAAGTAGAGAATGGGGTCCAGGGGCCGTGTAAGCCACGCTGGAACTTTGAGCA
AATCTCCTTCCCCAACATGGCTTCAGACGGCCGCCATACCCTCCTGCTTGCCCCCGCGCC
AGAGCTGCTCCCGGCCAATGTCGCCGGGCGGGAGACGGACGCCGAGCCCTGGTGCCAGAA
GCTCAACCAGCGGAAGGAGAAGCTCTCCAGGCGGGAACGGGAGCAGCAGGCAGAGGCCCA
GCACTTCCGGGAGGACGTGAACTCAGATCCCGAGGTGCAGCGCTGCTCCAGCTGGCAGGA
GTACAAGCAGCTGCTGCAGAGGCGGCACCTGCAGAAGACCCAGAGCCGCCCCCCACACCT
CTGGGACCAGGCTGTCACCCCCTTGCTGAGTCCTGGTCAAGCAGACTCCCCAGCCACAGC
CCTTCAGCTTATCTCTGTGCTGCAGACAACACACCTTGCCGATGGAGGTGCCCGGCTGCT
CGAGAAGTCTGGAGGCTTGGAGATCAGCTTTGATGTCTACCAGGCTGACGCTGTGGCCAC
GTTCCGAAAGAATAACCCCGGCAAGCCCTACGTTCGGATGTGCATTAGTGGATTTGATGA
GCCAGTCCCAGACCTCTGCACCCTCAAGCGGTTGTCCTACCAGAGCGGGGATGTTCCTCT
GATCTTTGCCCTGGTGGATCACGGAGACATCTCCTTCTACAGCGTCAGGGACTTCACGCT
GCCCAAGGATGTGGAACACTGACCACGCAGCTCTGGCAGGGCCTGGGGTCTGCTCTGGGG
GACCTGGACTGTCTACTCTCAGGGACCATCTCAGTTGCCTCCTACACCCAGACTCTGATC
TGTAGCTTCAGGGGCTAGTCTGGGCCTTGGCCCCGGGTGTCTGGCGCTTGCAGGAGAGCA
AAGCCTTGCCCCCTGCCTGGCTGCTGCAGCGCTTCCAAGCCCCACGTCTGAGAGTGCTGC
TTTGCAGTGATCCCCTGCAAACTCAGGACTAGATTTCAGAGACCCAGCCAGGTGGGGCAG
AAGAGAGGACTCTGTGCCTTTAATTGAGAGGGTGCCTGCTTCAAGCGATACAGCCAAAGC
CATTAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61864891|ref|XP_588361.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61864891|ref|XP_588361.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               188-307, + strand, RNAz p=0.995169
               

               
               891-1009, + strand, RNAz p=0.697628

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-307, + strand, RNAz p=0.995169
               

               
               891-1009, + strand, RNAz p=0.697628

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               69-713, gnl|bosTau2|chr19 (51561569-51560925)
               

               
               69-713, gnl|Hg17|chr17 (71029380-71030009)
               

               
               69-713, gnl|Mm7|chr11 (115929423-115930052)
               


               
               891-1388, gnl|bosTau2|chr19 (51559132-51558651)
               

               
               891-1388, gnl|Hg17|chr17 (71031937-71032397)
               

               
               891-1388, gnl|Mm7|chr11 (115931627-115932120)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-713, gnl|bosTau2|chr19 (51561569-51560925)
               

               
               69-713, gnl|Hg17|chr17 (71029380-71030009)
               

               
               69-713, gnl|Mm7|chr11 (115929423-115930052)
               


               
               891-1388, gnl|bosTau2|chr19 (51559132-51558651)
               

               
               891-1388, gnl|Hg17|chr17 (71031937-71032397)
               

               
               891-1388, gnl|Mm7|chr11 (115931627-115932120)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)

	188-307, + strand, RNAz p=0.995169
	891-1009, + strand, RNAz p=0.697628

	69-713, gnl\|bosTau2\|chr19 (51561569-51560925)
	69-713, gnl\|Hg17\|chr17 (71029380-71030009)
	69-713, gnl\|Mm7\|chr11 (115929423-115930052)

	891-1388, gnl\|bosTau2\|chr19 (51559132-51558651)
	891-1388, gnl\|Hg17\|chr17 (71031937-71032397)
	891-1388, gnl\|Mm7\|chr11 (115931627-115932120)

	mcp (0.170648)
	eye (0.170503)
	cag (0.151194)
	pty (0.142714)
	clu (0.119646)
	pgl (0.118483)
	jej (0.0989218)