Non-Coding RNA Search

Ss1.1-Pig4-TMW8042C22.5

Sequence:


               
               ACAGAAGTTCCCAGGCTAGGGATCGAACCTGCGCCACAGCAGTAACAATGCTGGATCCTT
AACCCACTGAGCCACAAAGGAACACCTCAGTGTTAACTGTAAGCCTTTACTATGAACTAG
AAGAGTGAAACCAAGATGGTGACACAGGCCCTTCCTAAGTCTGCTCCCCTCAGAAACACC
CACCGTGAGTTTGACATTCTAGGTTTCATCCATCCACATGACAGGGCCACCAGCCCCATC
GCATGGCTGGCCAACGCCGCCGTCAGGGAGACCCAGGCCCACATTCCGGTTCTTCTCTTT
CTTAAGCAAGTCGGGTGTTACAGCAGGGGCAGGTCAACCGCGCCTTGTACTCCTTGATCT
CCTCCTGGAGGATTTCATCAGCATCTGCGTAAACCTCCACCTTCCTCTGATGTTCTGGGC
GCAGGGCCTGGAATTCAATGAGTGTTTTGACACATGAGCCAGGCTGAGAGAGGAAGCAGA
GCGGGGCTTCAGCCCAGGTGGTCTGCTTGGAGTTCTCTAGACAGAATCACAAAGTGAGAG
TGTGAGCCAGCATCCCAGGTCGCTGTACCTTCACGTACAGCCTCACCTTCCTCTTGTTGA
GCTCCAGGGCCTGGCTGCGCAGCGTCAGCTCCTTCTCTACACCCCCAAGGCTGCCCTGCA
AGGCCCGCTCTTTCTCCTCCAGCTTCTGCACGGTCAGCAGCTGGGCATCCACCTGAGACT
TGAGGCCAAGAACCTGCTCGCCCAGCTCATCTTTCTCCTCCCGCAGCAGCTTATGAATCT
GGTTGGCCTTGATCCGCTCAGACATCAGCTTGAAGTTGGCATCGTCCTTTTCCCGCAGCT
GCTGCAACAGCCGCCCATTCTGCTCCTGCATGTCCTCAAAAGCCTGGCCTGTCACATCCA
TCTCGGACAGCAGAGCCTCCTCCTCCTGCTTGGTGGCACCCAACTTGCGCTGCAGATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGAAGTTCCCAGGCTAGGGATCGAACCTGCGCCACAGCAGTAACAATGCTGGATCCTT
AACCCACTGAGCCACAAAGGAACACCTCAGTGTTAACTGTAAGCCTTTACTATGAACTAG
AAGAGTGAAACCAAGATGGTGACACAGGCCCTTCCTAAGTCTGCTCCCCTCAGAAACACC
CACCGTGAGTTTGACATTCTAGGTTTCATCCATCCACATGACAGGGCCACCAGCCCCATC
GCATGGCTGGCCAACGCCGCCGTCAGGGAGACCCAGGCCCACATTCCGGTTCTTCTCTTT
CTTAAGCAAGTCGGGTGTTACAGCAGGGGCAGGTCAACCGCGCCTTGTACTCCTTGATCT
CCTCCTGGAGGATTTCATCAGCATCTGCGTAAACCTCCACCTTCCTCTGATGTTCTGGGC
GCAGGGCCTGGAATTCAATGAGTGTTTTGACACATGAGCCAGGCTGAGAGAGGAAGCAGA
GCGGGGCTTCAGCCCAGGTGGTCTGCTTGGAGTTCTCTAGACAGAATCACAAAGTGAGAG
TGTGAGCCAGCATCCCAGGTCGCTGTACCTTCACGTACAGCCTCACCTTCCTCTTGTTGA
GCTCCAGGGCCTGGCTGCGCAGCGTCAGCTCCTTCTCTACACCCCCAAGGCTGCCCTGCA
AGGCCCGCTCTTTCTCCTCCAGCTTCTGCACGGTCAGCAGCTGGGCATCCACCTGAGACT
TGAGGCCAAGAACCTGCTCGCCCAGCTCATCTTTCTCCTCCCGCAGCAGCTTATGAATCT
GGTTGGCCTTGATCCGCTCAGACATCAGCTTGAAGTTGGCATCGTCCTTTTCCCGCAGCT
GCTGCAACAGCCGCCCATTCTGCTCCTGCATGTCCTCAAAAGCCTGGCCTGTCACATCCA
TCTCGGACAGCAGAGCCTCCTCCTCCTGCTTGGTGGCACCCAACTTGCGCTGCAGATGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38196993|gb|AAH04527.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38196993|gb|AAH04527.2|

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               703-929, gnl|bosTau2|chr25 (25666037-25666265)
               

               
               703-929, gnl|canFam2|chr6 (20417821-20417595)
               

               
               703-929, gnl|danRer3|chr12 (23641133-23641355)
               

               
               703-929, gnl|dasNov1|scaffold_13022 (3646-3420)
               

               
               703-929, gnl|echTel1|scaffold_307548 (54680-54903)
               

               
               703-929, gnl|fr1|chrUn (101873737-101873515)
               

               
               703-929, gnl|galGal2|chrZ (27614166-27614386)
               

               
               703-929, gnl|hg17|chr16 (30688000-30688226)
               

               
               703-929, gnl|Hg17|chr16 (30688232-30688004)
               

               
               703-929, gnl|loxAfr1|scaffold_217545 (670-896)
               

               
               703-929, gnl|mm7|chr7 (123693682-123693905)
               

               
               703-929, gnl|Mm7|chr7 (123693911-123693683)
               

               
               703-929, gnl|monDom2|scaffold_17 (8790194-8790413)
               

               
               703-929, gnl|oryCun1|scaffold_209057 (38993-38769)
               

               
               703-929, gnl|panTro1|chr18 (31467360-31467586)
               

               
               703-929, gnl|rheMac2|chr20 (28844927-28845153)
               

               
               703-929, gnl|rn3|chr1 (187034303-187034526)
               

               
               703-929, gnl|tetNig1|chr2 (4662433-4662208)
               

               
               703-929, gnl|xenTro1|scaffold_409 (974918-975150)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               703-929, gnl|bosTau2|chr25 (25666037-25666265)
               

               
               703-929, gnl|canFam2|chr6 (20417821-20417595)
               

               
               703-929, gnl|danRer3|chr12 (23641133-23641355)
               

               
               703-929, gnl|dasNov1|scaffold_13022 (3646-3420)
               

               
               703-929, gnl|echTel1|scaffold_307548 (54680-54903)
               

               
               703-929, gnl|fr1|chrUn (101873737-101873515)
               

               
               703-929, gnl|galGal2|chrZ (27614166-27614386)
               

               
               703-929, gnl|hg17|chr16 (30688000-30688226)
               

               
               703-929, gnl|Hg17|chr16 (30688232-30688004)
               

               
               703-929, gnl|loxAfr1|scaffold_217545 (670-896)
               

               
               703-929, gnl|mm7|chr7 (123693682-123693905)
               

               
               703-929, gnl|Mm7|chr7 (123693911-123693683)
               

               
               703-929, gnl|monDom2|scaffold_17 (8790194-8790413)
               

               
               703-929, gnl|oryCun1|scaffold_209057 (38993-38769)
               

               
               703-929, gnl|panTro1|chr18 (31467360-31467586)
               

               
               703-929, gnl|rheMac2|chr20 (28844927-28845153)
               

               
               703-929, gnl|rn3|chr1 (187034303-187034526)
               

               
               703-929, gnl|tetNig1|chr2 (4662433-4662208)
               

               
               703-929, gnl|xenTro1|scaffold_409 (974918-975150)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	703-929, gnl\|bosTau2\|chr25 (25666037-25666265)
	703-929, gnl\|canFam2\|chr6 (20417821-20417595)
	703-929, gnl\|danRer3\|chr12 (23641133-23641355)
	703-929, gnl\|dasNov1\|scaffold_13022 (3646-3420)
	703-929, gnl\|echTel1\|scaffold_307548 (54680-54903)
	703-929, gnl\|fr1\|chrUn (101873737-101873515)
	703-929, gnl\|galGal2\|chrZ (27614166-27614386)
	703-929, gnl\|hg17\|chr16 (30688000-30688226)
	703-929, gnl\|Hg17\|chr16 (30688232-30688004)
	703-929, gnl\|loxAfr1\|scaffold_217545 (670-896)
	703-929, gnl\|mm7\|chr7 (123693682-123693905)
	703-929, gnl\|Mm7\|chr7 (123693911-123693683)
	703-929, gnl\|monDom2\|scaffold_17 (8790194-8790413)
	703-929, gnl\|oryCun1\|scaffold_209057 (38993-38769)
	703-929, gnl\|panTro1\|chr18 (31467360-31467586)
	703-929, gnl\|rheMac2\|chr20 (28844927-28845153)
	703-929, gnl\|rn3\|chr1 (187034303-187034526)
	703-929, gnl\|tetNig1\|chr2 (4662433-4662208)
	703-929, gnl\|xenTro1\|scaffold_409 (974918-975150)