Non-Coding RNA Search

Ss1.1-Pig4-TMW8042D11.3

Sequence:


               
               CAGCCAACTCAAAGCCAAAAAACTTCTTAAATAGTCATTATGTGAGGGACGGGGAAGCAA
AAGGAGCAGGGGAGGCCCACAGAGCACGACCCAGGAAACCGCGAGCCACGAGGTCAGCTT
GTGATCACAGGGGAAACTGAGGCCACCAGACAGACAAGAGGACAGCTGGGAGGAAGGGCC
CGGCGGCAACAGAACAAATTAAGGCTGCTGGGGAACCTGAGTCCATGTGAAGCTCGAGTT
GGCTGTCAAGAACTTCTTCTTCTTTTTTTTTTTTTAAATATAAGTTAGACACAGGGTCGA
GGGTCAGGGTTGAGGTGAAGACGAGAATGGAGTTTCACGGTACAAAGCTCTAAGGATACT
AGCTCCTGGGCGCCCAGGGTGCAAACAGACTTGTGGCAACACAGACGGACGGACGGAGCC
ACGTTGCTACTTGTCACTTAAGGCAGGAAGCGCACAAAGGAAGTGACGGAATCGGCGCCT
GCGTCCTTATTTACAAGGTGGGAGCCTCCCCTGTGGTTCTCAACCTTCATCAGGCACACT
CGTGATCTAGTGATGGTTGCAACCCACTCTTTAAAGGCAAAGACGTAAGATTTACAGGGA
AAAGCTTCGGCTTTTGTGAATTCACTCTCAAACACACACCAAGCTGGTTTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCAACTCAAAGCCAAAAAACTTCTTAAATAGTCATTATGTGAGGGACGGGGAAGCAA
AAGGAGCAGGGGAGGCCCACAGAGCACGACCCAGGAAACCGCGAGCCACGAGGTCAGCTT
GTGATCACAGGGGAAACTGAGGCCACCAGACAGACAAGAGGACAGCTGGGAGGAAGGGCC
CGGCGGCAACAGAACAAATTAAGGCTGCTGGGGAACCTGAGTCCATGTGAAGCTCGAGTT
GGCTGTCAAGAACTTCTTCTTCTTTTTTTTTTTTTAAATATAAGTTAGACACAGGGTCGA
GGGTCAGGGTTGAGGTGAAGACGAGAATGGAGTTTCACGGTACAAAGCTCTAAGGATACT
AGCTCCTGGGCGCCCAGGGTGCAAACAGACTTGTGGCAACACAGACGGACGGACGGAGCC
ACGTTGCTACTTGTCACTTAAGGCAGGAAGCGCACAAAGGAAGTGACGGAATCGGCGCCT
GCGTCCTTATTTACAAGGTGGGAGCCTCCCCTGTGGTTCTCAACCTTCATCAGGCACACT
CGTGATCTAGTGATGGTTGCAACCCACTCTTTAAAGGCAAAGACGTAAGATTTACAGGGA
AAAGCTTCGGCTTTTGTGAATTCACTCTCAAACACACACCAAGCTGGTTTCAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               335-441, - strand, RNAz p=0.969602
               

               
               475-582, - strand, RNAz p=0.959588
               

               
               478-591, - strand, RNAz p=0.961074

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               335-441, - strand, RNAz p=0.969602
               

               
               475-582, - strand, RNAz p=0.959588
               

               
               478-591, - strand, RNAz p=0.961074

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of AF208967, -
               

               
               5' of AF208967, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF208967, -
               

               
               5' of AF208967, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               166-660, gnl|bosTau2|chr18 (55657240-55657734)
               

               
               166-660, gnl|canFam2|chr1 (104197597-104197158)
               

               
               166-660, gnl|dasNov1|scaffold_34438 (1711-2145)
               

               
               166-660, gnl|echTel1|scaffold_289427 (5196-5654)
               

               
               166-660, gnl|hg17|chr19 (62015517-62015961)
               

               
               166-660, gnl|Hg17|chr19 (62015516-62016009)
               

               
               166-660, gnl|loxAfr1|scaffold_21113 (24204-23739)
               

               
               166-660, gnl|mm7|chr7 (6265286-6265767)
               

               
               166-660, gnl|Mm7|chr7 (6265286-6265811)
               

               
               166-660, gnl|monDom2|scaffold_105 (840786-841208)
               

               
               166-660, gnl|oryCun1|scaffold_194076 (33402-32934)
               

               
               166-660, gnl|panTro1|chr20 (59565368-59565813)
               

               
               166-660, gnl|rheMac2|chr19 (62714978-62715428)
               

               
               166-660, gnl|rn3|chr1 (65604380-65603927)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-660, gnl|bosTau2|chr18 (55657240-55657734)
               

               
               166-660, gnl|canFam2|chr1 (104197597-104197158)
               

               
               166-660, gnl|dasNov1|scaffold_34438 (1711-2145)
               

               
               166-660, gnl|echTel1|scaffold_289427 (5196-5654)
               

               
               166-660, gnl|hg17|chr19 (62015517-62015961)
               

               
               166-660, gnl|Hg17|chr19 (62015516-62016009)
               

               
               166-660, gnl|loxAfr1|scaffold_21113 (24204-23739)
               

               
               166-660, gnl|mm7|chr7 (6265286-6265767)
               

               
               166-660, gnl|Mm7|chr7 (6265286-6265811)
               

               
               166-660, gnl|monDom2|scaffold_105 (840786-841208)
               

               
               166-660, gnl|oryCun1|scaffold_194076 (33402-32934)
               

               
               166-660, gnl|panTro1|chr20 (59565368-59565813)
               

               
               166-660, gnl|rheMac2|chr19 (62714978-62715428)
               

               
               166-660, gnl|rn3|chr1 (65604380-65603927)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               pgl (0.118483)

	335-441, - strand, RNAz p=0.969602
	475-582, - strand, RNAz p=0.959588
	478-591, - strand, RNAz p=0.961074

	166-660, gnl\|bosTau2\|chr18 (55657240-55657734)
	166-660, gnl\|canFam2\|chr1 (104197597-104197158)
	166-660, gnl\|dasNov1\|scaffold_34438 (1711-2145)
	166-660, gnl\|echTel1\|scaffold_289427 (5196-5654)
	166-660, gnl\|hg17\|chr19 (62015517-62015961)
	166-660, gnl\|Hg17\|chr19 (62015516-62016009)
	166-660, gnl\|loxAfr1\|scaffold_21113 (24204-23739)
	166-660, gnl\|mm7\|chr7 (6265286-6265767)
	166-660, gnl\|Mm7\|chr7 (6265286-6265811)
	166-660, gnl\|monDom2\|scaffold_105 (840786-841208)
	166-660, gnl\|oryCun1\|scaffold_194076 (33402-32934)
	166-660, gnl\|panTro1\|chr20 (59565368-59565813)
	166-660, gnl\|rheMac2\|chr19 (62714978-62715428)
	166-660, gnl\|rn3\|chr1 (65604380-65603927)