Non-Coding RNA Search

Ss1.1-Pig4-TMW8042D12.5

Sequence:


               
               GGAGGGGGGATTCTGGAACCACGGGCACATCAGGACTCGGAGGACCAGCAGCAGCGTGCC
CGGTGGGCCTGGGGTCCAGGAAGGCATTCTGGAATCGAAGAGCACGCGAGATTCTGAGCA
CCAGGGGCAGAGGCGGCCAGACAACCTCAGGGAGGTGTTGGGGTGTCCCCGTCCCCCGAA
GGGCCCCGGGCCCTGCCCCGAGGGGGCAGCAAGAAGAGCTTCCCGTCCCCGGTCCGTCCC
CCGCCCACTTTCCCCACCACCCCTCGCTCGGTATAAATCATGTTTATAAGTTATGGAAGA
ACCGGGACATTTTACAGAAAAAAACCAAAAAAAACAACAAAAAATATACATGGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGGGGGATTCTGGAACCACGGGCACATCAGGACTCGGAGGACCAGCAGCAGCGTGCC
CGGTGGGCCTGGGGTCCAGGAAGGCATTCTGGAATCGAAGAGCACGCGAGATTCTGAGCA
CCAGGGGCAGAGGCGGCCAGACAACCTCAGGGAGGTGTTGGGGTGTCCCCGTCCCCCGAA
GGGCCCCGGGCCCTGCCCCGAGGGGGCAGCAAGAAGAGCTTCCCGTCCCCGGTCCGTCCC
CCGCCCACTTTCCCCACCACCCCTCGCTCGGTATAAATCATGTTTATAAGTTATGGAAGA
ACCGGGACATTTTACAGAAAAAAACCAAAAAAAACAACAAAAAATATACATGGAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               193-311, - strand, RNAz p=0.599979

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-311, - strand, RNAz p=0.599979

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-360, gnl|bosTau2|chr18 (38884991-38884636)
               

               
               2-360, gnl|Hg17|chr19 (50098422-50098781)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-360, gnl|bosTau2|chr18 (38884991-38884636)
               

               
               2-360, gnl|Hg17|chr19 (50098422-50098781)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cag (0.151194)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	2-360, gnl\|bosTau2\|chr18 (38884991-38884636)
	2-360, gnl\|Hg17\|chr19 (50098422-50098781)