Non-Coding RNA Search

Ss1.1-Pig4-TMW8042D16.3

Sequence:


               
               ACCACTTCAGGCCCCGCACCACCAGTGCTCTTTGGCCCAGGAACTGTGGCTGGGAAGTTG
CCTCCAGCAGTGGGATCCAGAGAAGCCAAGGAGAAGAGAGCCCCCCTCTTCCTCTTTTGG
CCTCTTGCATCCAAGACAGTGCCTGAGAAGCCCAACACAGAAGAGAAGTAGCAAACTGTA
CATTCCTTCTCCTTCCCCTGCTCCAGAAGGTGCCAACAATGAAGATGAAATACTATCTGT
ATCTGGTGGCTCAGCCCCAGGGGGGTAGGGAGAAATGAAGGACACTCTTCCAAGCAGTAA
GGCACTTAGTCACATTAAGGCTAAGGTGTTGGCCAGTTAATATGCAAAGATATTTCAAAC
TTCTCATATCCTTCATCTTTGCCTCTCAAAATTAGGAAACTGGTGGATTTCTTGCCAAGA
AGTCTCCCTTGGGATATTTGGGAGAAGGAAAGGTAAAGTTCATATCTTTAACAGGCATTG
TTGATGAGGGTCATTGAAGGAATAATGGGGAGTTGAGGTGTGTTGCTAAAGCATAGGACT
TGCTGAGAACCAATGTGATTAAGAAAGGGGCCTAATGTAAGGGAGGGGACCTCAAATTCT
TGTTTGGATGGGTGTCATGAATGTTCTTTTGGACTAATGGTGACTTAGTGTGCAGCAATG
CACCATGGATCATGGGGAATTTCCTAGCACTAGCGTGCTTCTAGTTTTAGATAACTCCCA
CCTTTAGTCCCTGGCCCCTTGTATTTTCCTCTCTTCCTCTCTCAAGGACCACTTCCTCCC
CATTTTGCCTGTCCATGGACTGGGGCTTATGTCTTTGCCACTGTCTGGTTCTTAGTGTCC
CAGACTCTGGGAGATGAGCTCCAAATGCTGTCCTCCCTGCCTCGTCCTGTAACGAGATAT
AGTATTTACTCTTAACATAGGATCATTTGAAACAGGAGTTCTGAGGAGGAGAGAGTGAGG
GTTCTGCTATTGACTGACTTGAGAGGTGGCTTCTCCTCCAAAGGTGTAGGCTCCAGAGTT
TCCTAACATAGTAAATGTAAAGAGCAGATAAGGGAAATAATAGTGTCTTTCTCTTTTCAT
TAAAGGTGTTTTAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGGGGGGGGGCCCTTTTTTAAATTTTTCTGGGGGGGGCCCAATTTTCCCCCCC
CCCTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCACTTCAGGCCCCGCACCACCAGTGCTCTTTGGCCCAGGAACTGTGGCTGGGAAGTTG
CCTCCAGCAGTGGGATCCAGAGAAGCCAAGGAGAAGAGAGCCCCCCTCTTCCTCTTTTGG
CCTCTTGCATCCAAGACAGTGCCTGAGAAGCCCAACACAGAAGAGAAGTAGCAAACTGTA
CATTCCTTCTCCTTCCCCTGCTCCAGAAGGTGCCAACAATGAAGATGAAATACTATCTGT
ATCTGGTGGCTCAGCCCCAGGGGGGTAGGGAGAAATGAAGGACACTCTTCCAAGCAGTAA
GGCACTTAGTCACATTAAGGCTAAGGTGTTGGCCAGTTAATATGCAAAGATATTTCAAAC
TTCTCATATCCTTCATCTTTGCCTCTCAAAATTAGGAAACTGGTGGATTTCTTGCCAAGA
AGTCTCCCTTGGGATATTTGGGAGAAGGAAAGGTAAAGTTCATATCTTTAACAGGCATTG
TTGATGAGGGTCATTGAAGGAATAATGGGGAGTTGAGGTGTGTTGCTAAAGCATAGGACT
TGCTGAGAACCAATGTGATTAAGAAAGGGGCCTAATGTAAGGGAGGGGACCTCAAATTCT
TGTTTGGATGGGTGTCATGAATGTTCTTTTGGACTAATGGTGACTTAGTGTGCAGCAATG
CACCATGGATCATGGGGAATTTCCTAGCACTAGCGTGCTTCTAGTTTTAGATAACTCCCA
CCTTTAGTCCCTGGCCCCTTGTATTTTCCTCTCTTCCTCTCTCAAGGACCACTTCCTCCC
CATTTTGCCTGTCCATGGACTGGGGCTTATGTCTTTGCCACTGTCTGGTTCTTAGTGTCC
CAGACTCTGGGAGATGAGCTCCAAATGCTGTCCTCCCTGCCTCGTCCTGTAACGAGATAT
AGTATTTACTCTTAACATAGGATCATTTGAAACAGGAGTTCTGAGGAGGAGAGAGTGAGG
GTTCTGCTATTGACTGACTTGAGAGGTGGCTTCTCCTCCAAAGGTGTAGGCTCCAGAGTT
TCCTAACATAGTAAATGTAAAGAGCAGATAAGGGAAATAATAGTGTCTTTCTCTTTTCAT
TAAAGGTGTTTTAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGGGGGGGGGCCCTTTTTTAAATTTTTCTGGGGGGGGCCCAATTTTCCCCCCC
CCCTTTTTTTTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-196, - strand, RNAz p=0.998693
               

               
               641-751, - strand, RNAz p=0.735113

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-196, - strand, RNAz p=0.998693
               

               
               641-751, - strand, RNAz p=0.735113

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1099, gnl|bosTau2|chr10 (16072672-16071562)
               

               
               2-1099, gnl|Hg17|chr14 (21060148-21059071)
               

               
               2-1099, gnl|Mm7|chr14 (47645886-47644860)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1099, gnl|bosTau2|chr10 (16072672-16071562)
               

               
               2-1099, gnl|Hg17|chr14 (21060148-21059071)
               

               
               2-1099, gnl|Mm7|chr14 (47645886-47644860)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               spl (0.143184)
               

               
               cty (0.10408)

	41-196, - strand, RNAz p=0.998693
	641-751, - strand, RNAz p=0.735113

	2-1099, gnl\|bosTau2\|chr10 (16072672-16071562)
	2-1099, gnl\|Hg17\|chr14 (21060148-21059071)
	2-1099, gnl\|Mm7\|chr14 (47645886-47644860)

	hyp (0.285673)
	cbe (0.239234)
	ece (0.229305)
	fcc (0.197785)
	spl (0.143184)
	cty (0.10408)