Non-Coding RNA Search

Ss1.1-Pig4-TMW8042E01.5

Sequence:


               
               AAGCATCTTGGTAGAGTATGGTTTCCAGACATGATGCCCACTTGGTAAAGACCAAATGAC
ATAGGGCATGATGAGCAGCACCTTCACTTTAAGCGTATTGTATTATAATAGAAGTTTATT
TCCTGTGCGTCTGATGTAATTCTACTATTTTGTGGCACAGAAATTTGGTATCTTCACTGA
GTATATAAGGATTGTTTTTTGGAAGACCCATGGACCAGCTTTGGTCAGAAAACTTCATCT
ATTTCTTTAGCCTAATAGTCAAATCAAAAAAAGTGATTCAAATCTGAAAGGAATGACCAG
TAATAAAGATTAAGCATTTTACAGTCTGAGGGAAATGAAACCTATATATTACAGTATCTA
ATTGAATAGTAATAGGTTTTCCAAAATGTTATGTTCTCTATGCATTTTTTAAAAATGTAA
ACTTGACATTTTAGGGTCTTCAGTTATACATACACACCTGTTATAAGGTGTTTAATATAG
CTCAGGAAAGTGAGCATTTTGTGAGAAAAATGTAGGATATATCGTATCTAATGAAAAATA
CTGAATGTTCTAAAATGTTACAAAGCTGTTTTAAAGAGGTACATATAATTAATTGGAATA
CTTAAACTGATAAATGTCACATAGTATGTGAAGGATAATAAACAGAGCCAAGATCAAATT
AAAAGAAAATGAATGGAATAGAAGGAAGGCAGTGTTTATTAGCTTTGTATAAACTTTTAG
GATTGCTCTATAATCTGCTAAACTATCAGTTCTTTTCTGTGATACATTACTATGTATGTG
GCACTTGGGGCATCATATATAAAGTAACGAATGGTTTACCAGTTCTCCTTGGGCTTATCT
CTGTTTAAACTAGTTTTGAAGTATTATACTGTAATCGAAATGAGAAGTTTATCTGTTTTA
AAAAGCCAAATTGAAATAATTAAAAGTAGAACTTCAAAATGTTTGTTTATAAGTTGTTTC
CATGCAAGGATAGTAGTCTCCAGTAAATTTTAGTGATGGTTCATTTTTACATTTTGGAAT
TACAGTTATGTAAATAGAATTTTCAAAAATCCTAAAAGGAGCACCAGTGTACAGTTTAGC
ATAAACAGTAAATTTAAAAGAGTATATATTTAAGTTTATAATCAAATTTTTAAGTAAATA
TTCTTAGTGGACTGGAAAATTTTAATAGAAAAATGTCTGCAATTTTGTGATTGTTACTTT
GGTTAAACTGATATTATTTAAGTAAGGTAGCATTTTTACTTTCATACATTGTAGAATCTG
CAAAAATACTAAGTTTGGGGGTACATTTATTTTTTTTTGTTTTTTGATATTATATAAACT
TTGATTCTGAGCACTAGTGCTAGTAGATAATTACCTCCTGAGGGAAATAAGAAGTGATTT
ACCCCCAGTGGAATATATTAATGCTTGAAGCTTAGAAAGCATCTTGGTAGATATGGAAGC
TGATGTCTCATGGATCTAATCTATTTTTAAAAATAGATTACCTCCCTAAGAATTAATTAA
AGGGTGATTTTTCTGTATAATTTATGCTTTCAAAAGTGATGGTATTCTGACCACATATAA
ATGAGAAGAAAAAAAAGCTGATCCAGACATGGAAATTAAAAGCAGTTATTGTAATGTTCC
TTCCTCTTACTAAACAGTTAAAATCTTTTGATTGTACAAGAAATACCTGTGTTTGTGGAT
GAAGCTTTTTTCCCTTGAATAACTTTGGAAAATGGATTTGACAGTATGTAATCAGTTCTA
CTAACCAAAGCTTAACTTGGAAATTTACTTTTTGTACAAATTGAATTATACAGTGCTTGA
AATACTTGTAAGTCACTTTATAAGCAAAATGCATAGCACTTAATTTGTTTAAACTATAGA
ATATATGCTAAATGCTTTTATCAGTTTAAGAATAAAAATAGTTACTAATGCTGTTGTATT
AGTTTTTAAAACTTANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCATCTTGGTAGAGTATGGTTTCCAGACATGATGCCCACTTGGTAAAGACCAAATGAC
ATAGGGCATGATGAGCAGCACCTTCACTTTAAGCGTATTGTATTATAATAGAAGTTTATT
TCCTGTGCGTCTGATGTAATTCTACTATTTTGTGGCACAGAAATTTGGTATCTTCACTGA
GTATATAAGGATTGTTTTTTGGAAGACCCATGGACCAGCTTTGGTCAGAAAACTTCATCT
ATTTCTTTAGCCTAATAGTCAAATCAAAAAAAGTGATTCAAATCTGAAAGGAATGACCAG
TAATAAAGATTAAGCATTTTACAGTCTGAGGGAAATGAAACCTATATATTACAGTATCTA
ATTGAATAGTAATAGGTTTTCCAAAATGTTATGTTCTCTATGCATTTTTTAAAAATGTAA
ACTTGACATTTTAGGGTCTTCAGTTATACATACACACCTGTTATAAGGTGTTTAATATAG
CTCAGGAAAGTGAGCATTTTGTGAGAAAAATGTAGGATATATCGTATCTAATGAAAAATA
CTGAATGTTCTAAAATGTTACAAAGCTGTTTTAAAGAGGTACATATAATTAATTGGAATA
CTTAAACTGATAAATGTCACATAGTATGTGAAGGATAATAAACAGAGCCAAGATCAAATT
AAAAGAAAATGAATGGAATAGAAGGAAGGCAGTGTTTATTAGCTTTGTATAAACTTTTAG
GATTGCTCTATAATCTGCTAAACTATCAGTTCTTTTCTGTGATACATTACTATGTATGTG
GCACTTGGGGCATCATATATAAAGTAACGAATGGTTTACCAGTTCTCCTTGGGCTTATCT
CTGTTTAAACTAGTTTTGAAGTATTATACTGTAATCGAAATGAGAAGTTTATCTGTTTTA
AAAAGCCAAATTGAAATAATTAAAAGTAGAACTTCAAAATGTTTGTTTATAAGTTGTTTC
CATGCAAGGATAGTAGTCTCCAGTAAATTTTAGTGATGGTTCATTTTTACATTTTGGAAT
TACAGTTATGTAAATAGAATTTTCAAAAATCCTAAAAGGAGCACCAGTGTACAGTTTAGC
ATAAACAGTAAATTTAAAAGAGTATATATTTAAGTTTATAATCAAATTTTTAAGTAAATA
TTCTTAGTGGACTGGAAAATTTTAATAGAAAAATGTCTGCAATTTTGTGATTGTTACTTT
GGTTAAACTGATATTATTTAAGTAAGGTAGCATTTTTACTTTCATACATTGTAGAATCTG
CAAAAATACTAAGTTTGGGGGTACATTTATTTTTTTTTGTTTTTTGATATTATATAAACT
TTGATTCTGAGCACTAGTGCTAGTAGATAATTACCTCCTGAGGGAAATAAGAAGTGATTT
ACCCCCAGTGGAATATATTAATGCTTGAAGCTTAGAAAGCATCTTGGTAGATATGGAAGC
TGATGTCTCATGGATCTAATCTATTTTTAAAAATAGATTACCTCCCTAAGAATTAATTAA
AGGGTGATTTTTCTGTATAATTTATGCTTTCAAAAGTGATGGTATTCTGACCACATATAA
ATGAGAAGAAAAAAAAGCTGATCCAGACATGGAAATTAAAAGCAGTTATTGTAATGTTCC
TTCCTCTTACTAAACAGTTAAAATCTTTTGATTGTACAAGAAATACCTGTGTTTGTGGAT
GAAGCTTTTTTCCCTTGAATAACTTTGGAAAATGGATTTGACAGTATGTAATCAGTTCTA
CTAACCAAAGCTTAACTTGGAAATTTACTTTTTGTACAAATTGAATTATACAGTGCTTGA
AATACTTGTAAGTCACTTTATAAGCAAAATGCATAGCACTTAATTTGTTTAAACTATAGA
ATATATGCTAAATGCTTTTATCAGTTTAAGAATAAAAATAGTTACTAATGCTGTTGTATT
AGTTTTTAAAACTTANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1411-1508, - strand, RNAz p=0.977722

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1411-1508, - strand, RNAz p=0.977722

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1946, gnl|bosTau2|chr12 (26195080-26197012)
               

               
               1-1946, gnl|Hg17|chr13 (76479328-76477363)
               

               
               1-1946, gnl|Mm7|chr14 (97515766-97513841)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1946, gnl|bosTau2|chr12 (26195080-26197012)
               

               
               1-1946, gnl|Hg17|chr13 (76479328-76477363)
               

               
               1-1946, gnl|Mm7|chr14 (97515766-97513841)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               tra (0.369276)
               

               
               fce (0.271592)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               fce (0.271592)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)

	1-1946, gnl\|bosTau2\|chr12 (26195080-26197012)
	1-1946, gnl\|Hg17\|chr13 (76479328-76477363)
	1-1946, gnl\|Mm7\|chr14 (97515766-97513841)

	tra (0.369276)
	fce (0.271592)
	ill (0.175593)
	mcp (0.170648)
	tbr (0.154178)
	bfe (0.149858)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	ret (0.128733)
	thg (0.126791)
	pgl (0.118483)