Ss1.1-Pig4-TMW8042E13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTAAGGTTTTTTAGGTTCTTTATTATGAGAGGTGAGGCAAACTC AAAGAGGGTCAGTGGCCTGGTGGGGTGTGACCCCAACCAGCTGGCAGTCAGGGCAGGGTG CCATATGCCCCATTTCTCATCTTCGGTTCATCCCTGGGGTGCCACCATCACTCAGCAGAT TCTGCGTCAAACCTGAGGTCCTGAAGAACCTCGCTGATCTCTTCCATGGTTTTAATTACC TTCATCTTCAGCTGGTCCATCTGCATGGTATCCTCCTGCTCAGTCAGCTCTGGTGTCCCC ATCAGCTGTAGCAGGGCCACCGTGGCCAGGCGCGTCTCCTCCAGCTGCTGCAGCCTGCGC ACGTGGCTCGCGAGCAGCGGCTGCTGTCGGGGTCCGGTCAGCTCCGCCTCCACCGCCAGC ACTTCCCGAGAGGCGGCGGTGAAAGCCTGGGTCACCTCGTGTACCGTGCTCCGGTAGCGC GGGAAGTCGTAAGGCGGGCCGCTGCTCAGGTACTGGCGGTGGCCTTCCTCCAGCCGACGG AAGGCCTGCGCGCGCTCAGCCTGCAACTGGTGGATGCGCTGTACCAGCACCCGGATCGGG GCATCTTTCCAAGGCCACACCAGCTCCTCTCTTTCCGGGCCTCCCGTGTTATCCGCAGCC TCAGGAACCGCGGAGACAGCCGACGCTCGGGCTCGAGCTCACCCAAGGCCACACCAGCTC CTCTCTTTCCGGGCCTCCCGTGTTATCCGCAGCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTAAGGTTTTTTAGGTTCTTTATTATGAGAGGTGAGGCAAACTC AAAGAGGGTCAGTGGCCTGGTGGGGTGTGACCCCAACCAGCTGGCAGTCAGGGCAGGGTG CCATATGCCCCATTTCTCATCTTCGGTTCATCCCTGGGGTGCCACCATCACTCAGCAGAT TCTGCGTCAAACCTGAGGTCCTGAAGAACCTCGCTGATCTCTTCCATGGTTTTAATTACC TTCATCTTCAGCTGGTCCATCTGCATGGTATCCTCCTGCTCAGTCAGCTCTGGTGTCCCC ATCAGCTGTAGCAGGGCCACCGTGGCCAGGCGCGTCTCCTCCAGCTGCTGCAGCCTGCGC ACGTGGCTCGCGAGCAGCGGCTGCTGTCGGGGTCCGGTCAGCTCCGCCTCCACCGCCAGC ACTTCCCGAGAGGCGGCGGTGAAAGCCTGGGTCACCTCGTGTACCGTGCTCCGGTAGCGC GGGAAGTCGTAAGGCGGGCCGCTGCTCAGGTACTGGCGGTGGCCTTCCTCCAGCCGACGG AAGGCCTGCGCGCGCTCAGCCTGCAACTGGTGGATGCGCTGTACCAGCACCCGGATCGGG GCATCTTTCCAAGGCCACACCAGCTCCTCTCTTTCCGGGCCTCCCGTGTTATCCGCAGCC TCAGGAACCGCGGAGACAGCCGACGCTCGGGCTCGAGCTCACCCAAGGCCACACCAGCTC CTCTCTTTCCGGGCCTCCCGTGTTATCCGCAGCCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 19-133, + strand, RNAz p=0.818989 | |
| 408-525, + strand, RNAz p=0.859337 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 19-133, + strand, RNAz p=0.818989 | |
| 408-525, + strand, RNAz p=0.859337 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 19-240, gnl|bosTau2|chr7 (2031003-2030783) | |
| 19-240, gnl|canFam2|chr20 (47475228-47475038) | |
| 19-240, gnl|galGal2|chr28 (3242311-3242119) | |
| 19-240, gnl|hg17|chr19 (18563892-18564081) | |
| 19-240, gnl|Hg17|chr19 (18564139-18563918) | |
| 19-240, gnl|loxAfr1|scaffold_42866 (37816-38007) | |
| 19-240, gnl|mm7|chr8 (68959677-68959491) | |
| 19-240, gnl|Mm7|chr8 (68959444-68959649) | |
| 19-240, gnl|monDom2|scaffold_75 (1110602-1110784) | |
| 19-240, gnl|panTro1|chr20 (19594239-19594428) | |
| 19-240, gnl|rheMac2|chr19 (18211710-18211899) | |
| 19-240, gnl|rn3|chr16 (19431029-19431215) | |
| 318-525, gnl|bosTau2|chr7 (2029142-2028935) | |
| 318-525, gnl|canFam2|chr20 (47477042-47476829) | |
| 318-525, gnl|echTel1|scaffold_234276 (549-762) | |
| 318-525, gnl|fr1|chrUn (97885591-97885378) | |
| 318-525, gnl|galGal2|chr28 (3242933-3242704) | |
| 318-525, gnl|hg17|chr19 (18561286-18561499) | |
| 318-525, gnl|Hg17|chr19 (18561496-18561289) | |
| 318-525, gnl|loxAfr1|scaffold_42866 (36493-36706) | |
| 318-525, gnl|mm7|chr8 (68961105-68960892) | |
| 318-525, gnl|Mm7|chr8 (68960893-68961100) | |
| 318-525, gnl|monDom2|scaffold_75 (1109480-1109693) | |
| 318-525, gnl|oryCun1|scaffold_195260 (4256-4043) | |
| 318-525, gnl|panTro1|chr20 (19591635-19591848) | |
| 318-525, gnl|rheMac2|chr19 (18208674-18208887) | |
| 318-525, gnl|rn3|chr16 (19429582-19429795) | |
| 526-742, gnl|bosTau2|chr7 (2028641-2028425) | |
| 526-742, gnl|Hg17|chr19 (18560887-18560671) | |
| 526-742, gnl|Mm7|chr8 (68961637-68961833) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 19-240, gnl|bosTau2|chr7 (2031003-2030783) | |
| 19-240, gnl|canFam2|chr20 (47475228-47475038) | |
| 19-240, gnl|galGal2|chr28 (3242311-3242119) | |
| 19-240, gnl|hg17|chr19 (18563892-18564081) | |
| 19-240, gnl|Hg17|chr19 (18564139-18563918) | |
| 19-240, gnl|loxAfr1|scaffold_42866 (37816-38007) | |
| 19-240, gnl|mm7|chr8 (68959677-68959491) | |
| 19-240, gnl|Mm7|chr8 (68959444-68959649) | |
| 19-240, gnl|monDom2|scaffold_75 (1110602-1110784) | |
| 19-240, gnl|panTro1|chr20 (19594239-19594428) | |
| 19-240, gnl|rheMac2|chr19 (18211710-18211899) | |
| 19-240, gnl|rn3|chr16 (19431029-19431215) | |
| 318-525, gnl|bosTau2|chr7 (2029142-2028935) | |
| 318-525, gnl|canFam2|chr20 (47477042-47476829) | |
| 318-525, gnl|echTel1|scaffold_234276 (549-762) | |
| 318-525, gnl|fr1|chrUn (97885591-97885378) | |
| 318-525, gnl|galGal2|chr28 (3242933-3242704) | |
| 318-525, gnl|hg17|chr19 (18561286-18561499) | |
| 318-525, gnl|Hg17|chr19 (18561496-18561289) | |
| 318-525, gnl|loxAfr1|scaffold_42866 (36493-36706) | |
| 318-525, gnl|mm7|chr8 (68961105-68960892) | |
| 318-525, gnl|Mm7|chr8 (68960893-68961100) | |
| 318-525, gnl|monDom2|scaffold_75 (1109480-1109693) | |
| 318-525, gnl|oryCun1|scaffold_195260 (4256-4043) | |
| 318-525, gnl|panTro1|chr20 (19591635-19591848) | |
| 318-525, gnl|rheMac2|chr19 (18208674-18208887) | |
| 318-525, gnl|rn3|chr16 (19429582-19429795) | |
| 526-742, gnl|bosTau2|chr7 (2028641-2028425) | |
| 526-742, gnl|Hg17|chr19 (18560887-18560671) | |
| 526-742, gnl|Mm7|chr8 (68961637-68961833) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| cbr (0.767853) | |
| hlv (0.696282) | |
| cly (0.603209) | |
| csp (0.483559) | |
| mas (0.42061) | |
| fcc (0.39557) | |
| med (0.348756) | |
| ecc (0.345105) | |
| eye (0.341006) | |
| vin (0.332557) | |
| sme (0.305437) | |
| cag (0.302389) | |
| ese (0.253004) | |
| pgl (0.236967) | |
| eje (0.197668) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| sug (0.127291) | |
| eep (0.122564) | |
| jca (0.11396) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.767853) | |
| hlv (0.696282) | |
| cly (0.603209) | |
| csp (0.483559) | |
| mas (0.42061) | |
| fcc (0.39557) | |
| med (0.348756) | |
| ecc (0.345105) | |
| eye (0.341006) | |
| vin (0.332557) | |
| sme (0.305437) | |
| cag (0.302389) | |
| ese (0.253004) | |
| pgl (0.236967) | |
| eje (0.197668) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| sug (0.127291) | |
| eep (0.122564) | |
| jca (0.11396) |