Ss1.1-Pig4-TMW8042E19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAGACGCTTCTACCTAGACACGGTCTCTGCACTCAACTTGGCAGCCAGATCCAAGGAG GTGATCAACCGGCCTTTACCAATGAGCGCTTACAGCTTCATGTCTTGGCACCTATTAAAC TGTCTCAGAAAGAACTGCTAGGCCCATCAGAGGCAAAGAGAGCCCGAGGCCCGGAGGAAG AGGAAAGTGGAAGTCCTGAACCCCCAGCAGCTCCAGCCTCTGCCTTCCAGAAACTCAGCC CCCTGCAGAAGCTGAGTAGCATGGACCCAGCTATGCTGGAGCGCCTCCTGAGCTTGGACC GTCTGCTGGGCTCCCAGGGGAGCCAGGGGACCCCTCTGCTGAGCACCCCGAAGCGAGAGC GGATGGTGCTCATGAAGACAGTGGAGGAGAAGGACTTGGAAATTGAGAGGCTTAAGATGA AGCAAAAAGAACTGGAAGCCAAGGTGCTGGCCCAGGAGGCTGCAGACCCAAAGGAAAAAG AGAATTACTCTCCTACCACGCTCAGACCTCTTGCCCGCCGCACAGTCACAGTGGCGAAGC CCCTCAAAAGAGCTGTGGTGATGCCCTTACAACTGATTCAGGAGCAGGCAGCATCCCCAA ATGCTGAGATCCACATCTTGAAGAAGAAAGGCCGGAAGAGAAAGCTGGAGTCCCTGGATG CCTCAGAGCCCGAGGAGAAGGCTGAGGATTGCTGGGAGCTACAGATCAGCCCGGAGCTAC TGGCCCATGGGCGCCAAAAAATATTAGATCTGCTGAATGAAGGCTCAGCCCGGGATCTAC GCAGCCTGCAGCGCATTGGCCAAAAGAAGGCCCAGCTCATCGTGGGCTGGAGGGAGCTCC ATGGCCCCTTCAGCCAGGTGGAGGACCTGGAACGCGTGGAGGGCATCTCCAGCAAACAGA TGGAGTCGTTCCTGAAGGCGAACATCCTGGGTCTCGCCGCGGGCCAGCGCTGCGGCCCCT CCTGACTGCCAGCTCCCCTCTTCACTTTGCTTTTTTTTTTTTTTTTTAAATCCTTGTGTA ACCCACTTTCGTGTAAATACAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAGACGCTTCTACCTAGACACGGTCTCTGCACTCAACTTGGCAGCCAGATCCAAGGAG GTGATCAACCGGCCTTTACCAATGAGCGCTTACAGCTTCATGTCTTGGCACCTATTAAAC TGTCTCAGAAAGAACTGCTAGGCCCATCAGAGGCAAAGAGAGCCCGAGGCCCGGAGGAAG AGGAAAGTGGAAGTCCTGAACCCCCAGCAGCTCCAGCCTCTGCCTTCCAGAAACTCAGCC CCCTGCAGAAGCTGAGTAGCATGGACCCAGCTATGCTGGAGCGCCTCCTGAGCTTGGACC GTCTGCTGGGCTCCCAGGGGAGCCAGGGGACCCCTCTGCTGAGCACCCCGAAGCGAGAGC GGATGGTGCTCATGAAGACAGTGGAGGAGAAGGACTTGGAAATTGAGAGGCTTAAGATGA AGCAAAAAGAACTGGAAGCCAAGGTGCTGGCCCAGGAGGCTGCAGACCCAAAGGAAAAAG AGAATTACTCTCCTACCACGCTCAGACCTCTTGCCCGCCGCACAGTCACAGTGGCGAAGC CCCTCAAAAGAGCTGTGGTGATGCCCTTACAACTGATTCAGGAGCAGGCAGCATCCCCAA ATGCTGAGATCCACATCTTGAAGAAGAAAGGCCGGAAGAGAAAGCTGGAGTCCCTGGATG CCTCAGAGCCCGAGGAGAAGGCTGAGGATTGCTGGGAGCTACAGATCAGCCCGGAGCTAC TGGCCCATGGGCGCCAAAAAATATTAGATCTGCTGAATGAAGGCTCAGCCCGGGATCTAC GCAGCCTGCAGCGCATTGGCCAAAAGAAGGCCCAGCTCATCGTGGGCTGGAGGGAGCTCC ATGGCCCCTTCAGCCAGGTGGAGGACCTGGAACGCGTGGAGGGCATCTCCAGCAAACAGA TGGAGTCGTTCCTGAAGGCGAACATCCTGGGTCTCGCCGCGGGCCAGCGCTGCGGCCCCT CCTGACTGCCAGCTCCCCTCTTCACTTTGCTTTTTTTTTTTTTTTTTAAATCCTTGTGTA ACCCACTTTCGTGTAAATACAGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 234-407, + strand, RNAz p=0.915472 | |
| 722-841, + strand, RNAz p=0.566879 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 234-407, + strand, RNAz p=0.915472 | |
| 722-841, + strand, RNAz p=0.566879 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of CR590954, + |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 1-102, gnl|bosTau2|chr25 (24531700-24531802) | |
| 1-102, gnl|canFam2|chr6 (20873112-20873270) | |
| 1-102, gnl|danRer3|chr12 (1903894-1903758) | |
| 1-102, gnl|echTel1|scaffold_242195 (3356-3213) | |
| 1-102, gnl|fr1|chrUn (113126921-113126764) | |
| 1-102, gnl|Hg17|chr16 (29718501-29718603) | |
| 1-102, gnl|hg17|chr16_random (98270-98428) | |
| 1-102, gnl|loxAfr1|scaffold_10353 (79443-79601) | |
| 1-102, gnl|mm7|chr7 (123129600-123129442) | |
| 1-102, gnl|Mm7|chr7 (123129542-123129440) | |
| 1-102, gnl|monDom2|scaffold_5 (119899658-119899502) | |
| 1-102, gnl|oryCun1|scaffold_68685 (4499-4341) | |
| 1-102, gnl|panTro1|chr18 (30476770-30476928) | |
| 1-102, gnl|rheMac2|chr20 (27749265-27749423) | |
| 1-102, gnl|rn3|chr1 (186360261-186360103) | |
| 1-102, gnl|tetNig1|chrUn_random (129184772-129184620) | |
| 1-102, gnl|xenTro1|scaffold_1581 (50197-50348) | |
| 234-407, gnl|bosTau2|chr25 (24534009-24534182) | |
| 234-407, gnl|canFam2|chr6 (20875522-20875737) | |
| 234-407, gnl|canFam2|chr6 (20875522-20875737) | |
| 234-407, gnl|dasNov1|scaffold_11112 (58892-59106) | |
| 234-407, gnl|dasNov1|scaffold_11112 (58892-59106) | |
| 234-407, gnl|echTel1|scaffold_169440 (12779-12977) | |
| 234-407, gnl|echTel1|scaffold_169440 (12779-12977) | |
| 234-407, gnl|hg17|chr16 (29721546-29721763) | |
| 234-407, gnl|Hg17|chr16 (29721586-29721759) | |
| 234-407, gnl|hg17|chr16_random (101371-101588) | |
| 234-407, gnl|loxAfr1|scaffold_10353 (81169-81368) | |
| 234-407, gnl|loxAfr1|scaffold_10353 (81169-81368) | |
| 234-407, gnl|mm7|chr7 (123127691-123127485) | |
| 234-407, gnl|mm7|chr7 (123127691-123127485) | |
| 234-407, gnl|Mm7|chr7 (123127660-123127487) | |
| 234-407, gnl|monDom2|scaffold_5 (119897387-119897167) | |
| 234-407, gnl|monDom2|scaffold_5 (119897387-119897167) | |
| 234-407, gnl|oryCun1|scaffold_68685 (2286-2091) | |
| 234-407, gnl|oryCun1|scaffold_68685 (2286-2091) | |
| 234-407, gnl|panTro1|chr18 (30479874-30480091) | |
| 234-407, gnl|panTro1|chr18 (30479874-30480091) | |
| 234-407, gnl|rheMac2|chr20 (27752323-27752540) | |
| 234-407, gnl|rheMac2|chr20 (27752323-27752540) | |
| 234-407, gnl|rn3|chr1 (186358472-186358267) | |
| 234-407, gnl|rn3|chr1 (186358472-186358267) | |
| 234-407, gnl|xenTro1|scaffold_1581 (50975-51201) | |
| 234-407, gnl|xenTro1|scaffold_1581 (50975-51201) | |
| 643-870, gnl|bosTau2|chr25 (24536690-24536914) | |
| 643-870, gnl|Hg17|chr16 (29723634-29723870) | |
| 643-870, gnl|Mm7|chr7 (123124842-123124615) | |
| 913-1044, gnl|bosTau2|chr25 (24537131-24537265) | |
| 913-1044, gnl|Hg17|chr16 (29724080-29724195) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-102, gnl|bosTau2|chr25 (24531700-24531802) | |
| 1-102, gnl|canFam2|chr6 (20873112-20873270) | |
| 1-102, gnl|danRer3|chr12 (1903894-1903758) | |
| 1-102, gnl|echTel1|scaffold_242195 (3356-3213) | |
| 1-102, gnl|fr1|chrUn (113126921-113126764) | |
| 1-102, gnl|Hg17|chr16 (29718501-29718603) | |
| 1-102, gnl|hg17|chr16_random (98270-98428) | |
| 1-102, gnl|loxAfr1|scaffold_10353 (79443-79601) | |
| 1-102, gnl|mm7|chr7 (123129600-123129442) | |
| 1-102, gnl|Mm7|chr7 (123129542-123129440) | |
| 1-102, gnl|monDom2|scaffold_5 (119899658-119899502) | |
| 1-102, gnl|oryCun1|scaffold_68685 (4499-4341) | |
| 1-102, gnl|panTro1|chr18 (30476770-30476928) | |
| 1-102, gnl|rheMac2|chr20 (27749265-27749423) | |
| 1-102, gnl|rn3|chr1 (186360261-186360103) | |
| 1-102, gnl|tetNig1|chrUn_random (129184772-129184620) | |
| 1-102, gnl|xenTro1|scaffold_1581 (50197-50348) | |
| 234-407, gnl|bosTau2|chr25 (24534009-24534182) | |
| 234-407, gnl|canFam2|chr6 (20875522-20875737) | |
| 234-407, gnl|canFam2|chr6 (20875522-20875737) | |
| 234-407, gnl|dasNov1|scaffold_11112 (58892-59106) | |
| 234-407, gnl|dasNov1|scaffold_11112 (58892-59106) | |
| 234-407, gnl|echTel1|scaffold_169440 (12779-12977) | |
| 234-407, gnl|echTel1|scaffold_169440 (12779-12977) | |
| 234-407, gnl|hg17|chr16 (29721546-29721763) | |
| 234-407, gnl|Hg17|chr16 (29721586-29721759) | |
| 234-407, gnl|hg17|chr16_random (101371-101588) | |
| 234-407, gnl|loxAfr1|scaffold_10353 (81169-81368) | |
| 234-407, gnl|loxAfr1|scaffold_10353 (81169-81368) | |
| 234-407, gnl|mm7|chr7 (123127691-123127485) | |
| 234-407, gnl|mm7|chr7 (123127691-123127485) | |
| 234-407, gnl|Mm7|chr7 (123127660-123127487) | |
| 234-407, gnl|monDom2|scaffold_5 (119897387-119897167) | |
| 234-407, gnl|monDom2|scaffold_5 (119897387-119897167) | |
| 234-407, gnl|oryCun1|scaffold_68685 (2286-2091) | |
| 234-407, gnl|oryCun1|scaffold_68685 (2286-2091) | |
| 234-407, gnl|panTro1|chr18 (30479874-30480091) | |
| 234-407, gnl|panTro1|chr18 (30479874-30480091) | |
| 234-407, gnl|rheMac2|chr20 (27752323-27752540) | |
| 234-407, gnl|rheMac2|chr20 (27752323-27752540) | |
| 234-407, gnl|rn3|chr1 (186358472-186358267) | |
| 234-407, gnl|rn3|chr1 (186358472-186358267) | |
| 234-407, gnl|xenTro1|scaffold_1581 (50975-51201) | |
| 234-407, gnl|xenTro1|scaffold_1581 (50975-51201) | |
| 643-870, gnl|bosTau2|chr25 (24536690-24536914) | |
| 643-870, gnl|Hg17|chr16 (29723634-29723870) | |
| 643-870, gnl|Mm7|chr7 (123124842-123124615) | |
| 913-1044, gnl|bosTau2|chr25 (24537131-24537265) | |
| 913-1044, gnl|Hg17|chr16 (29724080-29724195) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ill (0.351185) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| lnt (0.142308) | |
| ldo (0.0970026) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.351185) | |
| nbm (0.198649) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| lnt (0.142308) | |
| ldo (0.0970026) |