Ss1.1-Pig4-TMW8042F10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTTCCAACATGGCGGCGGCGGTGTCCGGCGCGGTCGCCCGGGCGGGCTGGAGGCTCCT GCAGCTGCGGTGCCGCCTGCCCGTGTCCCGCTGCCGAGCAGCCCTGGTGCCACGTGCCTT CCATGCTTCAGCCGTGCAGCTGAGATCCACAGATCAGCAGAAGCAGCAACCTCTGCCCTC TTCTCAGCAACATTCTGAGACACGGGGTGCTGAAGAACCCAGTCCGGAGTCTTCTCATTC ACCCCCCAGGTACACAGACCAGGGCGGTGAGGAGGAAGAGGGCTACGAGAGCGAGGAGCA GCTGCAACACCGCATCCTGACGGCAGCCCTGGAGTTCGTGCCTGCCCATGGGTGGACAGC AGAGGCAATTGCGGAAGGAGCCAAGTCTCTGGGTCTCTCCACCGCGGCCGCCAGCATGTT TGGGAATGATGGCAGTGAGCTGATACTGCATTTTGTGACCCAGTGCAACGCCCGGCTCAC CCGTGTGCTGGAAGAGGAGCAGAAGCTGGTTCAGCTGGGCCAGGCAGAGAAGAAGAAGAC AGACCAGTTCCTGAAGGATGCTGTAGAAACCAGACTGAGAATGCTGATCCCGTACATTGA GCATTGGCCCCGGGCCCTCAGCATCCTCATGCTCCCTCACAACATCCCGTCCGGCCTGAG CCTGCTCACCAGCATGGTGGACGACATGTGGCATTACGCTGGGGACCAGTCCACGGATTT TAACTGGTACACCCGCCGTGCAGTGCTGGCTGGCATCTACAATACGACAGAGCTGGTGAT GATGCAGGACTCCTCCCCAGACTTTGAGGACACGTGGCGCTTCCTGGAAAACCGGATTAA CGATGCAATGAACATGGGCCACACTGCCAAGCAGGTGAAGTCCACCGGAGAGGCACTGGT GCAAGGACTCATGGGTGCGGCGGTGACGCTCAAGAACTTAACAGGCCTAAACCAGCGTCG GTGAGCAAGCAGGGACGTAAGCTAGAGTGCCCAGAAGAAAACCCGTGGATATATTTAAAG GGCTTTGAAATGTATGAGGTGCCGTCCACGGAACAGGGCGTTAACGAGAACACACAGAAG GATCTATCATACTACCACAGCCTCCTGCAAACCAGGGCACTGGAGGATACAGTCAGAGCC TGGGGTTGGGACACTTCAGTTCATAACACCAGGCCAGGCCTCCCGATGCCTTTCAGCACC TCAGCCGTGTGATTGGAAAACGCAACACTCAAGCATCCTGACCACAGAAACCCAGCTCGT TCCTGTCGTGGCCTCTCAGGCAGCTTGATCGTGTCTTAACCTCCCCAGAAGTGCTCTGTG GGGCTCCAAGTTGGAATCAGGGTCTGAAGTCACCCCAGGTGGCAGCTCCTCTACAGCACA GCACAGACCTGTACACCCAGAGGGTTCTGTGCTGCCTTTCCTTTCTCTGGCATCCTGAGA TGCTGCACCTGGGAACCCCCTCAGCAAGCTGCCTCACTTGAGACAGGTGCCTGCTGGACA GTGTGCTCAACCTGGTCAGAGGTGTGATGCCTGGCCCCTTGTTGAGTTACACTAGCACAT GTTGCAGGATTATTAGTGAACTTAGAGTCTGTAAAAATTATAATAAATACGTTTGAAGCA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTTCCAACATGGCGGCGGCGGTGTCCGGCGCGGTCGCCCGGGCGGGCTGGAGGCTCCT GCAGCTGCGGTGCCGCCTGCCCGTGTCCCGCTGCCGAGCAGCCCTGGTGCCACGTGCCTT CCATGCTTCAGCCGTGCAGCTGAGATCCACAGATCAGCAGAAGCAGCAACCTCTGCCCTC TTCTCAGCAACATTCTGAGACACGGGGTGCTGAAGAACCCAGTCCGGAGTCTTCTCATTC ACCCCCCAGGTACACAGACCAGGGCGGTGAGGAGGAAGAGGGCTACGAGAGCGAGGAGCA GCTGCAACACCGCATCCTGACGGCAGCCCTGGAGTTCGTGCCTGCCCATGGGTGGACAGC AGAGGCAATTGCGGAAGGAGCCAAGTCTCTGGGTCTCTCCACCGCGGCCGCCAGCATGTT TGGGAATGATGGCAGTGAGCTGATACTGCATTTTGTGACCCAGTGCAACGCCCGGCTCAC CCGTGTGCTGGAAGAGGAGCAGAAGCTGGTTCAGCTGGGCCAGGCAGAGAAGAAGAAGAC AGACCAGTTCCTGAAGGATGCTGTAGAAACCAGACTGAGAATGCTGATCCCGTACATTGA GCATTGGCCCCGGGCCCTCAGCATCCTCATGCTCCCTCACAACATCCCGTCCGGCCTGAG CCTGCTCACCAGCATGGTGGACGACATGTGGCATTACGCTGGGGACCAGTCCACGGATTT TAACTGGTACACCCGCCGTGCAGTGCTGGCTGGCATCTACAATACGACAGAGCTGGTGAT GATGCAGGACTCCTCCCCAGACTTTGAGGACACGTGGCGCTTCCTGGAAAACCGGATTAA CGATGCAATGAACATGGGCCACACTGCCAAGCAGGTGAAGTCCACCGGAGAGGCACTGGT GCAAGGACTCATGGGTGCGGCGGTGACGCTCAAGAACTTAACAGGCCTAAACCAGCGTCG GTGAGCAAGCAGGGACGTAAGCTAGAGTGCCCAGAAGAAAACCCGTGGATATATTTAAAG GGCTTTGAAATGTATGAGGTGCCGTCCACGGAACAGGGCGTTAACGAGAACACACAGAAG GATCTATCATACTACCACAGCCTCCTGCAAACCAGGGCACTGGAGGATACAGTCAGAGCC TGGGGTTGGGACACTTCAGTTCATAACACCAGGCCAGGCCTCCCGATGCCTTTCAGCACC TCAGCCGTGTGATTGGAAAACGCAACACTCAAGCATCCTGACCACAGAAACCCAGCTCGT TCCTGTCGTGGCCTCTCAGGCAGCTTGATCGTGTCTTAACCTCCCCAGAAGTGCTCTGTG GGGCTCCAAGTTGGAATCAGGGTCTGAAGTCACCCCAGGTGGCAGCTCCTCTACAGCACA GCACAGACCTGTACACCCAGAGGGTTCTGTGCTGCCTTTCCTTTCTCTGGCATCCTGAGA TGCTGCACCTGGGAACCCCCTCAGCAAGCTGCCTCACTTGAGACAGGTGCCTGCTGGACA GTGTGCTCAACCTGGTCAGAGGTGTGATGCCTGGCCCCTTGTTGAGTTACACTAGCACAT GTTGCAGGATTATTAGTGAACTTAGAGTCTGTAAAAATTATAATAAATACGTTTGAAGCA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 83-252, gnl|bosTau2|chr18 (21491293-21491121) | |
| 83-252, gnl|canFam2|chr2 (61854816-61854469) | |
| 83-252, gnl|dasNov1|scaffold_29526 (3582-3233) | |
| 83-252, gnl|galGal2|chr11 (540311-539879) | |
| 83-252, gnl|hg17|chr16 (56042351-56042703) | |
| 83-252, gnl|Hg17|chr16 (56042452-56042624) | |
| 83-252, gnl|loxAfr1|scaffold_11869 (78601-78969) | |
| 83-252, gnl|mm7|chr8 (93431565-93431934) | |
| 83-252, gnl|Mm7|chr8 (93431661-93431815) | |
| 83-252, gnl|monDom2|scaffold_35 (24464070-24464396) | |
| 83-252, gnl|panTro1|chr18 (50151352-50151709) | |
| 83-252, gnl|rheMac2|chr20 (55797668-55798025) | |
| 83-252, gnl|rn3|chr19 (10621423-10621079) | |
| 384-529, gnl|bosTau2|chr18 (21486635-21486490) | |
| 384-529, gnl|canFam2|chr2 (61849268-61849095) | |
| 384-529, gnl|danRer3|chr25 (16806043-16805880) | |
| 384-529, gnl|dasNov1|scaffold_152181 (289-461) | |
| 384-529, gnl|echTel1|scaffold_280101 (13-174) | |
| 384-529, gnl|fr1|chrUn (201358337-201358158) | |
| 384-529, gnl|galGal2|chr11 (538988-538819) | |
| 384-529, gnl|hg17|chr16 (56047894-56048069) | |
| 384-529, gnl|Hg17|chr16 (56047915-56048060) | |
| 384-529, gnl|loxAfr1|scaffold_11869 (83752-83927) | |
| 384-529, gnl|mm7|chr8 (93439153-93439321) | |
| 384-529, gnl|Mm7|chr8 (93439167-93439312) | |
| 384-529, gnl|monDom2|scaffold_35 (24465221-24465393) | |
| 384-529, gnl|oryCun1|scaffold_136035 (6887-6712) | |
| 384-529, gnl|panTro1|chr18 (50156928-50157103) | |
| 384-529, gnl|rheMac2|chr20 (55803629-55803804) | |
| 384-529, gnl|rn3|chr19 (10615598-10615430) | |
| 384-529, gnl|tetNig1|chr13 (682010-682166) | |
| 384-529, gnl|xenTro1|scaffold_264 (578642-578468) | |
| 608-717, gnl|bosTau2|chr18 (21484744-21484635) | |
| 608-717, gnl|canFam2|chr2 (61847141-61847004) | |
| 608-717, gnl|danRer3|chr25 (16804497-16804362) | |
| 608-717, gnl|dasNov1|scaffold_10337 (53855-53718) | |
| 608-717, gnl|echTel1|scaffold_280101 (1671-1801) | |
| 608-717, gnl|fr1|chrUn (201357113-201356990) | |
| 608-717, gnl|galGal2|chr11 (537353-537223) | |
| 608-717, gnl|hg17|chr16 (56049648-56049785) | |
| 608-717, gnl|Hg17|chr16 (56049653-56049762) | |
| 608-717, gnl|loxAfr1|scaffold_11869 (85734-85870) | |
| 608-717, gnl|mm7|chr8 (93440884-93441021) | |
| 608-717, gnl|Mm7|chr8 (93440889-93440998) | |
| 608-717, gnl|monDom2|scaffold_35 (24466867-24467004) | |
| 608-717, gnl|oryCun1|scaffold_136035 (5020-4884) | |
| 608-717, gnl|panTro1|chr18 (50158674-50158811) | |
| 608-717, gnl|rheMac2|chr20 (55805377-55805514) | |
| 608-717, gnl|rn3|chr19 (10613966-10613829) | |
| 608-717, gnl|tetNig1|chr13 (683087-683209) | |
| 608-717, gnl|xenTro1|scaffold_264 (576758-576640) | |
| 719-876, gnl|bosTau2|chr18 (21482718-21482561) | |
| 719-876, gnl|canFam2|chr2 (61845698-61845522) | |
| 719-876, gnl|danRer3|chr25 (16801128-16800953) | |
| 719-876, gnl|dasNov1|scaffold_152181 (3730-3906) | |
| 719-876, gnl|echTel1|scaffold_280101 (2949-3125) | |
| 719-876, gnl|fr1|chrUn (201356226-201356057) | |
| 719-876, gnl|galGal2|chr11 (535533-535364) | |
| 719-876, gnl|hg17|chr16 (56050967-56051144) | |
| 719-876, gnl|Hg17|chr16 (56050978-56051135) | |
| 719-876, gnl|loxAfr1|scaffold_11869 (87139-87317) | |
| 719-876, gnl|mm7|chr8 (93442148-93442325) | |
| 719-876, gnl|Mm7|chr8 (93442159-93442316) | |
| 719-876, gnl|monDom2|scaffold_35 (24468098-24468281) | |
| 719-876, gnl|oryCun1|scaffold_136035 (2791-2617) | |
| 719-876, gnl|panTro1|chr18 (50159993-50160170) | |
| 719-876, gnl|rheMac2|chr20 (55806700-55806877) | |
| 719-876, gnl|rn3|chr19 (10612691-10612514) | |
| 719-876, gnl|tetNig1|chr13 (683322-683491) | |
| 928-1620, gnl|bosTau2|chr18 (21481853-21481175) | |
| 928-1620, gnl|Hg17|chr16 (56052001-56052680) | |
| 928-1620, gnl|Mm7|chr8 (93443157-93443938) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 83-252, gnl|bosTau2|chr18 (21491293-21491121) | |
| 83-252, gnl|canFam2|chr2 (61854816-61854469) | |
| 83-252, gnl|dasNov1|scaffold_29526 (3582-3233) | |
| 83-252, gnl|galGal2|chr11 (540311-539879) | |
| 83-252, gnl|hg17|chr16 (56042351-56042703) | |
| 83-252, gnl|Hg17|chr16 (56042452-56042624) | |
| 83-252, gnl|loxAfr1|scaffold_11869 (78601-78969) | |
| 83-252, gnl|mm7|chr8 (93431565-93431934) | |
| 83-252, gnl|Mm7|chr8 (93431661-93431815) | |
| 83-252, gnl|monDom2|scaffold_35 (24464070-24464396) | |
| 83-252, gnl|panTro1|chr18 (50151352-50151709) | |
| 83-252, gnl|rheMac2|chr20 (55797668-55798025) | |
| 83-252, gnl|rn3|chr19 (10621423-10621079) | |
| 384-529, gnl|bosTau2|chr18 (21486635-21486490) | |
| 384-529, gnl|canFam2|chr2 (61849268-61849095) | |
| 384-529, gnl|danRer3|chr25 (16806043-16805880) | |
| 384-529, gnl|dasNov1|scaffold_152181 (289-461) | |
| 384-529, gnl|echTel1|scaffold_280101 (13-174) | |
| 384-529, gnl|fr1|chrUn (201358337-201358158) | |
| 384-529, gnl|galGal2|chr11 (538988-538819) | |
| 384-529, gnl|hg17|chr16 (56047894-56048069) | |
| 384-529, gnl|Hg17|chr16 (56047915-56048060) | |
| 384-529, gnl|loxAfr1|scaffold_11869 (83752-83927) | |
| 384-529, gnl|mm7|chr8 (93439153-93439321) | |
| 384-529, gnl|Mm7|chr8 (93439167-93439312) | |
| 384-529, gnl|monDom2|scaffold_35 (24465221-24465393) | |
| 384-529, gnl|oryCun1|scaffold_136035 (6887-6712) | |
| 384-529, gnl|panTro1|chr18 (50156928-50157103) | |
| 384-529, gnl|rheMac2|chr20 (55803629-55803804) | |
| 384-529, gnl|rn3|chr19 (10615598-10615430) | |
| 384-529, gnl|tetNig1|chr13 (682010-682166) | |
| 384-529, gnl|xenTro1|scaffold_264 (578642-578468) | |
| 608-717, gnl|bosTau2|chr18 (21484744-21484635) | |
| 608-717, gnl|canFam2|chr2 (61847141-61847004) | |
| 608-717, gnl|danRer3|chr25 (16804497-16804362) | |
| 608-717, gnl|dasNov1|scaffold_10337 (53855-53718) | |
| 608-717, gnl|echTel1|scaffold_280101 (1671-1801) | |
| 608-717, gnl|fr1|chrUn (201357113-201356990) | |
| 608-717, gnl|galGal2|chr11 (537353-537223) | |
| 608-717, gnl|hg17|chr16 (56049648-56049785) | |
| 608-717, gnl|Hg17|chr16 (56049653-56049762) | |
| 608-717, gnl|loxAfr1|scaffold_11869 (85734-85870) | |
| 608-717, gnl|mm7|chr8 (93440884-93441021) | |
| 608-717, gnl|Mm7|chr8 (93440889-93440998) | |
| 608-717, gnl|monDom2|scaffold_35 (24466867-24467004) | |
| 608-717, gnl|oryCun1|scaffold_136035 (5020-4884) | |
| 608-717, gnl|panTro1|chr18 (50158674-50158811) | |
| 608-717, gnl|rheMac2|chr20 (55805377-55805514) | |
| 608-717, gnl|rn3|chr19 (10613966-10613829) | |
| 608-717, gnl|tetNig1|chr13 (683087-683209) | |
| 608-717, gnl|xenTro1|scaffold_264 (576758-576640) | |
| 719-876, gnl|bosTau2|chr18 (21482718-21482561) | |
| 719-876, gnl|canFam2|chr2 (61845698-61845522) | |
| 719-876, gnl|danRer3|chr25 (16801128-16800953) | |
| 719-876, gnl|dasNov1|scaffold_152181 (3730-3906) | |
| 719-876, gnl|echTel1|scaffold_280101 (2949-3125) | |
| 719-876, gnl|fr1|chrUn (201356226-201356057) | |
| 719-876, gnl|galGal2|chr11 (535533-535364) | |
| 719-876, gnl|hg17|chr16 (56050967-56051144) | |
| 719-876, gnl|Hg17|chr16 (56050978-56051135) | |
| 719-876, gnl|loxAfr1|scaffold_11869 (87139-87317) | |
| 719-876, gnl|mm7|chr8 (93442148-93442325) | |
| 719-876, gnl|Mm7|chr8 (93442159-93442316) | |
| 719-876, gnl|monDom2|scaffold_35 (24468098-24468281) | |
| 719-876, gnl|oryCun1|scaffold_136035 (2791-2617) | |
| 719-876, gnl|panTro1|chr18 (50159993-50160170) | |
| 719-876, gnl|rheMac2|chr20 (55806700-55806877) | |
| 719-876, gnl|rn3|chr19 (10612691-10612514) | |
| 719-876, gnl|tetNig1|chr13 (683322-683491) | |
| 928-1620, gnl|bosTau2|chr18 (21481853-21481175) | |
| 928-1620, gnl|Hg17|chr16 (56052001-56052680) | |
| 928-1620, gnl|Mm7|chr8 (93443157-93443938) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| pla (0.66836) | |
| nms (0.641574) | |
| mas (0.42061) | |
| hea (0.204499) | |
| col (0.195008) | |
| ldo (0.194005) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.66836) | |
| nms (0.641574) | |
| mas (0.42061) | |
| hea (0.204499) | |
| col (0.195008) | |
| ldo (0.194005) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| csp (0.161186) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) |