Non-Coding RNA Search

Ss1.1-Pig4-TMW8042F19.3

Sequence:


               
               CAGCTGACGAGAGGGTCCAAGAAGGCCCCATTGCGTTGCCAGCACACTAGACCATTTCAG
AACCTACTCTAGGGTTGGTTGCTGAGTCATCCCAGACAAACTCTAGTGATGTCCTCTTAA
CCCTGGAACACAATGTCTGTGGTTGTGTCCTGACTTGAGTAGGTTATTACTGTTTAGAAG
ACTCATAATTCTGTTTCTATACTGGTTATGGTCATTTACTATGTTTTTTATTCCACCACT
TGTTCCTGTTGGCCTCACTTAGCAGTTGCAGGTGGGGAGGCTGGTTTCAGCTTGGGGTGG
TTAAAACTCCCAACATAAGCCATGCAAGTGCTGTCCAGGGTTCCTGCCTTTCTGACGGCA
CCACTGGTGAGTTCTTGGCCCTCTTGATAACTAGTAGTCCAGTCAGATGGCTAGATTAAT
GCTGCTCAGAGGCTAACTCAAGTCCTTGACATGTTTCATTTATAATTATGTGGATTATTT
ATTTTAAGAGCTTTTCTTTTAAAGGGCCAAATAGCTCTACAGATAAATGAGCTGCTGGGG
TGTGTAGAAAATATTGTCCAAATGTTGCCAAATATTGACTTTGTAAGGGGGATATCAAGC
TGCTGTTTATAAATATGAATGTCTTAAAAGCATTCTTGCTTGCTCTCTCTGTTGTAGATG
GTGTCTTAGCAAGTTCTGAGTTTTTCCAATGAACCCAATTTTAATATATGGTATTTTTGT
ATGCCAATCTGGTGTCTTGTCCTTTGTATATGTGGTAATGTTGATTTTATGACTACTGTT
AAAACACATTTGCTATGATTAAAATTCATAAAAGGATTTCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTGACGAGAGGGTCCAAGAAGGCCCCATTGCGTTGCCAGCACACTAGACCATTTCAG
AACCTACTCTAGGGTTGGTTGCTGAGTCATCCCAGACAAACTCTAGTGATGTCCTCTTAA
CCCTGGAACACAATGTCTGTGGTTGTGTCCTGACTTGAGTAGGTTATTACTGTTTAGAAG
ACTCATAATTCTGTTTCTATACTGGTTATGGTCATTTACTATGTTTTTTATTCCACCACT
TGTTCCTGTTGGCCTCACTTAGCAGTTGCAGGTGGGGAGGCTGGTTTCAGCTTGGGGTGG
TTAAAACTCCCAACATAAGCCATGCAAGTGCTGTCCAGGGTTCCTGCCTTTCTGACGGCA
CCACTGGTGAGTTCTTGGCCCTCTTGATAACTAGTAGTCCAGTCAGATGGCTAGATTAAT
GCTGCTCAGAGGCTAACTCAAGTCCTTGACATGTTTCATTTATAATTATGTGGATTATTT
ATTTTAAGAGCTTTTCTTTTAAAGGGCCAAATAGCTCTACAGATAAATGAGCTGCTGGGG
TGTGTAGAAAATATTGTCCAAATGTTGCCAAATATTGACTTTGTAAGGGGGATATCAAGC
TGCTGTTTATAAATATGAATGTCTTAAAAGCATTCTTGCTTGCTCTCTCTGTTGTAGATG
GTGTCTTAGCAAGTTCTGAGTTTTTCCAATGAACCCAATTTTAATATATGGTATTTTTGT
ATGCCAATCTGGTGTCTTGTCCTTTGTATATGTGGTAATGTTGATTTTATGACTACTGTT
AAAACACATTTGCTATGATTAAAATTCATAAAAGGATTTCAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-823, gnl|bosTau2|chr24 (44578744-44577929)
               

               
               1-823, gnl|Hg17|chr18 (57627159-57626280)
               

               
               1-823, gnl|Mm7|chr1 (105176958-105176100)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-823, gnl|bosTau2|chr24 (44578744-44577929)
               

               
               1-823, gnl|Hg17|chr18 (57627159-57626280)
               

               
               1-823, gnl|Mm7|chr1 (105176958-105176100)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               kid (0.778412)
               

               
               mga (0.32041)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               pan (0.23596)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.778412)
               

               
               mga (0.32041)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               pan (0.23596)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	1-823, gnl\|bosTau2\|chr24 (44578744-44577929)
	1-823, gnl\|Hg17\|chr18 (57627159-57626280)
	1-823, gnl\|Mm7\|chr1 (105176958-105176100)

	kid (0.778412)
	mga (0.32041)
	csk (0.281492)
	fce (0.271592)
	pan (0.23596)
	fhi (0.169578)
	isp (0.150376)
	lyg (0.133103)
	bla (0.124347)
	ecc (0.115035)
	eje (0.0988338)