Non-Coding RNA Search

Ss1.1-Pig4-TMW8042F20.3

Sequence:


               
               GCTTGGGTCTTTTTTTCCTTCTACACCTAAAATGATTATAGACAAGATTTCGTGGGAATT
TGAAACTCCTACATGCAGAAGTAACTGAAAGCACATAATATGCTGCAGGTTTCGTTGATT
TTAGTGCCACTATTAAGTCAATCAATTTTTGCTTGTCTCATAATTAATCTTTTTTAAAGT
TTGTACATAGGTAACAAAGTGTTACTTTTAAAGATACATAAAGGGCTGTAAGCTAATCGT
GTCTATTAAGTGGGATCATCAGACATGAGGAATTGGGATTTTGTCCTTTGTATCGTCTCA
TCTGCATTTCACCTTCCTACACTGGGTTTGTACTTGTGTGTTTTTTCTTTGTAAACACCC
TCTTTCCACTCTGAAGTCTCTGACTGTACCTATTCAACATACTTCTAATATTCTGCACAT
ATGGAAAAAGGTAAATTTTATATCAGTTTGTGCTTTGCTAACTGTAGATATTTATTACTC
TACGAGTTCTCTATTTTTATAACCACCTCTGGTCCATCATTTCTTTTAATTCACCTTTCT
TACTAATTCTGGTAATACGGGAGGGAGACATCTAGAAGAGAAGCTTAATTTATATTGTTT
CAGCCAATCTGTGAATGTAAAAACTACACTGTTGCCTTGCTATAGTCCAACCTCCTCTAA
TGTGAAGCATACATCTGTCCTGAAACCCACCCTAGCAGGTGGGGTGAAGCTAAACTCCTT
CTGGTGAATTTCATTTAACTCTTAGTTGTAACATGGCCCCATTGGCGTCAGCCCACAGAG
TGATGAGGTGCTGCTGTACAAGAGAATCAGTCTTCAATTTTTCCACTAGCTCTAACTAAG
AGACGTTTCCCTACACATGTACTATCTTTTTTTACAGATTGTGGGTGAATATGATTTAAA
AGCTTGGTTTAATAAACATTGAATCCCAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTGGGTCTTTTTTTCCTTCTACACCTAAAATGATTATAGACAAGATTTCGTGGGAATT
TGAAACTCCTACATGCAGAAGTAACTGAAAGCACATAATATGCTGCAGGTTTCGTTGATT
TTAGTGCCACTATTAAGTCAATCAATTTTTGCTTGTCTCATAATTAATCTTTTTTAAAGT
TTGTACATAGGTAACAAAGTGTTACTTTTAAAGATACATAAAGGGCTGTAAGCTAATCGT
GTCTATTAAGTGGGATCATCAGACATGAGGAATTGGGATTTTGTCCTTTGTATCGTCTCA
TCTGCATTTCACCTTCCTACACTGGGTTTGTACTTGTGTGTTTTTTCTTTGTAAACACCC
TCTTTCCACTCTGAAGTCTCTGACTGTACCTATTCAACATACTTCTAATATTCTGCACAT
ATGGAAAAAGGTAAATTTTATATCAGTTTGTGCTTTGCTAACTGTAGATATTTATTACTC
TACGAGTTCTCTATTTTTATAACCACCTCTGGTCCATCATTTCTTTTAATTCACCTTTCT
TACTAATTCTGGTAATACGGGAGGGAGACATCTAGAAGAGAAGCTTAATTTATATTGTTT
CAGCCAATCTGTGAATGTAAAAACTACACTGTTGCCTTGCTATAGTCCAACCTCCTCTAA
TGTGAAGCATACATCTGTCCTGAAACCCACCCTAGCAGGTGGGGTGAAGCTAAACTCCTT
CTGGTGAATTTCATTTAACTCTTAGTTGTAACATGGCCCCATTGGCGTCAGCCCACAGAG
TGATGAGGTGCTGCTGTACAAGAGAATCAGTCTTCAATTTTTCCACTAGCTCTAACTAAG
AGACGTTTCCCTACACATGTACTATCTTTTTTTACAGATTGTGGGTGAATATGATTTAAA
AGCTTGGTTTAATAAACATTGAATCCCAAACCTAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-927, gnl|bosTau2|chr22 (10654854-10655771)
               

               
               1-927, gnl|Hg17|chr3 (32184239-32185199)
               

               
               1-927, gnl|Mm7|chr9 (114551719-114550882)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-927, gnl|bosTau2|chr22 (10654854-10655771)
               

               
               1-927, gnl|Hg17|chr3 (32184239-32185199)
               

               
               1-927, gnl|Mm7|chr9 (114551719-114550882)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               hea (0.204499)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-927, gnl\|bosTau2\|chr22 (10654854-10655771)
	1-927, gnl\|Hg17\|chr3 (32184239-32185199)
	1-927, gnl\|Mm7\|chr9 (114551719-114550882)

	hea (0.204499)
	eye (0.170503)
	nco (0.161734)
	fat (0.147427)
	hyp (0.142837)
	pty (0.142714)
	cly (0.120642)
	pgl (0.118483)
	cty (0.10408)
	jej (0.0989218)