Non-Coding RNA Search

Ss1.1-Pig4-TMW8042F22.3

Sequence:


               
               GACAACGACACCCGCCCGTGGTGCTTCGTTTGGAGAGGCGACCAACTGAGCTGGCAATAT
TGCCGCCTGGCACGCTGCCAGGCTCCTATCGGGGAAGCGCCCCCAATCCTTACTCCGACC
CAGAGCCCCTCCGAGCACCAGGACTCGCCCCTTCTCTCGCGGGAGCCTCAGCCCACGACC
CAGACCCCGTCTCAAAACCTGACCTCAGCCTGGTGCGCGCCGCCGGAGCAGCGTGGTCCT
CTGCCCAGTGCGGGCCTGGTGGGCTGCGGACAGCGACTCCGCAAACGGCTGTCTTCTCTG
AACCGCATCGTCGGGGGACTGGTGGCTCTCCCCGGGGCGCACCCCTACATCGCCGCGCTG
TACTGGGGTCAAAATTTCTGCGCAGGCAGTCTCATCGCCCCCTGTTGGGTGCTGACCGCG
GCTCACTGCCTGCAGAACCGACCGGCGCCGGAGGAGCTGACTGTGGTGCTCGGCCAGGAC
CGCCATAATCAGAGTTGTGAGCAGTGCCAAACGCTGGCAGTGCGCTCCTACCGCCTGCAC
GAGTCCTACTCACCCAAGACCTACCAGCACGACCTGGCTCTGGTACGCCTGAAGGAGACA
GCGGACGGCTGCTGCGCACACCCGTCGCCTTTCGTTCAGCCGGTATGCCTGCCAAGAAGT
GTCGCCAGCTCCGCCGAACCCGAAGGCGCGCTCTGCGAGGTGGCCGGCTGGGGCCATCAG
TTCGAAGGGGCGGAGGAATATTCCAGTTTCCTGCAGGAGGCTCAGGTGCCGCTCATCAGT
CCGGAGCGCTGCTCCGCCGCCGACGTGCACGGAGCCGCTTTCACTCCCGGCATGCTCTGC
GCTGGTTTCCTCGAAGGCGGCACCGACGCGTGCCAGGGTGACTCCGGTGGCCCTCTGGTG
TGTGAAGACGAGACCGCAGAGCGCCAGCTCGTCCTGAGAGGCATCGTCAGTTGGGGTTCA
GGTTGTGGCGACCGCCTCAAGCCCGGTGTGTACACGGACGTGGCCAACTACTTGGCCTGG
ATCCAGGAGCACACCACTTCCTGACCTCCCAGGGACTCGTCTTTCCCTCCTGGGCAGTTC
TGGAATGGAAAGGTGGCTGGGGCGTGATTATGGACAGCAAGTATTGTGTTCTATTCCCCC
CAGCGCTGCCAGCCCGGCTGGCTCCAGGAATGTCATACGCACTCAATAAAGTGCTTTTGA
AGATGAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAACGACACCCGCCCGTGGTGCTTCGTTTGGAGAGGCGACCAACTGAGCTGGCAATAT
TGCCGCCTGGCACGCTGCCAGGCTCCTATCGGGGAAGCGCCCCCAATCCTTACTCCGACC
CAGAGCCCCTCCGAGCACCAGGACTCGCCCCTTCTCTCGCGGGAGCCTCAGCCCACGACC
CAGACCCCGTCTCAAAACCTGACCTCAGCCTGGTGCGCGCCGCCGGAGCAGCGTGGTCCT
CTGCCCAGTGCGGGCCTGGTGGGCTGCGGACAGCGACTCCGCAAACGGCTGTCTTCTCTG
AACCGCATCGTCGGGGGACTGGTGGCTCTCCCCGGGGCGCACCCCTACATCGCCGCGCTG
TACTGGGGTCAAAATTTCTGCGCAGGCAGTCTCATCGCCCCCTGTTGGGTGCTGACCGCG
GCTCACTGCCTGCAGAACCGACCGGCGCCGGAGGAGCTGACTGTGGTGCTCGGCCAGGAC
CGCCATAATCAGAGTTGTGAGCAGTGCCAAACGCTGGCAGTGCGCTCCTACCGCCTGCAC
GAGTCCTACTCACCCAAGACCTACCAGCACGACCTGGCTCTGGTACGCCTGAAGGAGACA
GCGGACGGCTGCTGCGCACACCCGTCGCCTTTCGTTCAGCCGGTATGCCTGCCAAGAAGT
GTCGCCAGCTCCGCCGAACCCGAAGGCGCGCTCTGCGAGGTGGCCGGCTGGGGCCATCAG
TTCGAAGGGGCGGAGGAATATTCCAGTTTCCTGCAGGAGGCTCAGGTGCCGCTCATCAGT
CCGGAGCGCTGCTCCGCCGCCGACGTGCACGGAGCCGCTTTCACTCCCGGCATGCTCTGC
GCTGGTTTCCTCGAAGGCGGCACCGACGCGTGCCAGGGTGACTCCGGTGGCCCTCTGGTG
TGTGAAGACGAGACCGCAGAGCGCCAGCTCGTCCTGAGAGGCATCGTCAGTTGGGGTTCA
GGTTGTGGCGACCGCCTCAAGCCCGGTGTGTACACGGACGTGGCCAACTACTTGGCCTGG
ATCCAGGAGCACACCACTTCCTGACCTCCCAGGGACTCGTCTTTCCCTCCTGGGCAGTTC
TGGAATGGAAAGGTGGCTGGGGCGTGATTATGGACAGCAAGTATTGTGTTCTATTCCCCC
CAGCGCTGCCAGCCCGGCTGGCTCCAGGAATGTCATACGCACTCAATAAAGTGCTTTTGA
AGATGAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|180361|gb|AAA70224.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|180361|gb|AAA70224.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               237-440, gnl|bosTau2|chr7 (21648093-21647890)
               

               
               237-440, gnl|Hg17|chr5 (176763669-176763466)
               

               
               237-440, gnl|Mm7|chr13 (54501580-54501377)
               


               
               561-728, gnl|bosTau2|chr7 (21647424-21647257)
               

               
               561-728, gnl|Hg17|chr5 (176763021-176762860)
               

               
               561-728, gnl|Mm7|chr13 (54501002-54500844)
               


               
               873-1205, gnl|bosTau2|chr7 (21646468-21646142)
               

               
               873-1205, gnl|Hg17|chr5 (176762070-176761752)
               

               
               873-1205, gnl|Mm7|chr13 (54498998-54498697)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               237-440, gnl|bosTau2|chr7 (21648093-21647890)
               

               
               237-440, gnl|Hg17|chr5 (176763669-176763466)
               

               
               237-440, gnl|Mm7|chr13 (54501580-54501377)
               


               
               561-728, gnl|bosTau2|chr7 (21647424-21647257)
               

               
               561-728, gnl|Hg17|chr5 (176763021-176762860)
               

               
               561-728, gnl|Mm7|chr13 (54501002-54500844)
               


               
               873-1205, gnl|bosTau2|chr7 (21646468-21646142)
               

               
               873-1205, gnl|Hg17|chr5 (176762070-176761752)
               

               
               873-1205, gnl|Mm7|chr13 (54498998-54498697)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cli (0.458435)
               

               
               fli (0.405762)
               

               
               lun (0.300978)
               

               
               ece (0.229305)
               

               
               eli (0.151814)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.458435)
               

               
               fli (0.405762)
               

               
               lun (0.300978)
               

               
               ece (0.229305)
               

               
               eli (0.151814)

	237-440, gnl\|bosTau2\|chr7 (21648093-21647890)
	237-440, gnl\|Hg17\|chr5 (176763669-176763466)
	237-440, gnl\|Mm7\|chr13 (54501580-54501377)

	561-728, gnl\|bosTau2\|chr7 (21647424-21647257)
	561-728, gnl\|Hg17\|chr5 (176763021-176762860)
	561-728, gnl\|Mm7\|chr13 (54501002-54500844)

	873-1205, gnl\|bosTau2\|chr7 (21646468-21646142)
	873-1205, gnl\|Hg17\|chr5 (176762070-176761752)
	873-1205, gnl\|Mm7\|chr13 (54498998-54498697)

	cli (0.458435)
	fli (0.405762)
	lun (0.300978)
	ece (0.229305)
	eli (0.151814)