Ss1.1-Pig4-TMW8042G01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACCCGAGGTCCGGCGGGACGGACTATCCCAGCGGAGAGACTGGCTGGGCGGCCGACGGA AGGACAAACTGGAGTGGCCTCGGCGGTGTTAGCTGAGCAGAGGCAGGATTTCCCTGGGGA GAATCAGTCTTCACTCAGAGTTTGCCGACAGTCAAGGATGGCGAGCAAGGGGCCCTCAGC CTCTGCGTCTCCCGAGAACTCCAGTGCAGGGGGTCCCAGTGGCAGCAGCAATGGCGCTGG CGAGAGTGGAGGGCAGGACAGTACCTTTGAGTGCAACATCTGCCTGGACACAGCCAAGGA TGCCGTCATCAGCCTTTGCGGCCACCTCTTCTGTTGGCCGTGTTTACATCAGTGGTTGGA GACCAGACCTAACAGACAGGTGTGTCCAGTTTGCAAAGCTGGCATCAGCCGCGACAAGGT CATCCCGCTGTACGGCAGGGGCAGCACTGGGCAACAGGACCCCAGGGAGAAGACTCCTCC CCGTCCTCAAGGACAGAGGCCAGAGCCGGAGAACAGAGGGGGATTTCAAGGGTTTGGATT TGGAGATGGTGGCTTCCAGATGTCTTTTGGAATTGGGGCATTTCCCTTTGGGATATTTGC CACAGCATTTAACATAAACGATGGGCGACCTCCTCCAGCTGTCCCTGGAACGCCCCAGTA TGTGGACGAGCAGTTCCTGTCACGCCTCTTCCTGTTTGTGGCCCTGGTGATCATGTTCTG GCTATTGATTGCCTAATGGTGAACTCCCAGCCTACATCCATGGCAGGGCCTCCGGATTGG TGACACGCCACCCTCACTCTTGATGTTTGACTTCCTGGCTGATCCTGACCCCTGGAATAG GGGGTTAGTAACATGTTAAGGAGTCTTCTCCATCAGAGCTTTGAGACTGAAGATCAGTTG TTGAGGACCCTGGAGTATTGCCACTGCTGTAAACACCCTGCTGTAACCTCAGGCCTTGGC ACTGAGTTGTGTCTCATGGGTTACACCGTGGAATCCTGTTCCAGCCAGCTCAGTAGGTCC TGACTCTGCACAGGGGAGAGGCAGGAGAGAAACTGTCAGTACAATTTCACCTGAGTTTAA TAATGCAACAACAAATGGATGAACCAAATAGTACTTGCAGAAACTCTTTTTTCATCTCTT TAAATACCCCTTGGTAAGTGGCCTCTGAAGTCATCTAGAAAGGTTCCCCTTCCAGATCCC AGTGCTCTTCTGTCCTCTTTCTTCCTCCTCTTCCTCAGCAGAGATATGAGAAAGTGCTGG CCTATGAAGATCATAGTTGAAGCAGCTGGCGCTGGAGTTGCTTTGTGAATTCACCAGAGA CCCTAAGATCTTTTGTTGCATCTGGGCCATGCTCAGTGTCTCTGGCTCCAGAGTGGTTTG AATGACCCCAGGTTTCCTGGCGTAGGTTATCCCCAGAGACATGTGGCTTCACTCACGGGT TTCCCATCAACTTTCCCTCCAAAGCTGTGCACATCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACCCGAGGTCCGGCGGGACGGACTATCCCAGCGGAGAGACTGGCTGGGCGGCCGACGGA AGGACAAACTGGAGTGGCCTCGGCGGTGTTAGCTGAGCAGAGGCAGGATTTCCCTGGGGA GAATCAGTCTTCACTCAGAGTTTGCCGACAGTCAAGGATGGCGAGCAAGGGGCCCTCAGC CTCTGCGTCTCCCGAGAACTCCAGTGCAGGGGGTCCCAGTGGCAGCAGCAATGGCGCTGG CGAGAGTGGAGGGCAGGACAGTACCTTTGAGTGCAACATCTGCCTGGACACAGCCAAGGA TGCCGTCATCAGCCTTTGCGGCCACCTCTTCTGTTGGCCGTGTTTACATCAGTGGTTGGA GACCAGACCTAACAGACAGGTGTGTCCAGTTTGCAAAGCTGGCATCAGCCGCGACAAGGT CATCCCGCTGTACGGCAGGGGCAGCACTGGGCAACAGGACCCCAGGGAGAAGACTCCTCC CCGTCCTCAAGGACAGAGGCCAGAGCCGGAGAACAGAGGGGGATTTCAAGGGTTTGGATT TGGAGATGGTGGCTTCCAGATGTCTTTTGGAATTGGGGCATTTCCCTTTGGGATATTTGC CACAGCATTTAACATAAACGATGGGCGACCTCCTCCAGCTGTCCCTGGAACGCCCCAGTA TGTGGACGAGCAGTTCCTGTCACGCCTCTTCCTGTTTGTGGCCCTGGTGATCATGTTCTG GCTATTGATTGCCTAATGGTGAACTCCCAGCCTACATCCATGGCAGGGCCTCCGGATTGG TGACACGCCACCCTCACTCTTGATGTTTGACTTCCTGGCTGATCCTGACCCCTGGAATAG GGGGTTAGTAACATGTTAAGGAGTCTTCTCCATCAGAGCTTTGAGACTGAAGATCAGTTG TTGAGGACCCTGGAGTATTGCCACTGCTGTAAACACCCTGCTGTAACCTCAGGCCTTGGC ACTGAGTTGTGTCTCATGGGTTACACCGTGGAATCCTGTTCCAGCCAGCTCAGTAGGTCC TGACTCTGCACAGGGGAGAGGCAGGAGAGAAACTGTCAGTACAATTTCACCTGAGTTTAA TAATGCAACAACAAATGGATGAACCAAATAGTACTTGCAGAAACTCTTTTTTCATCTCTT TAAATACCCCTTGGTAAGTGGCCTCTGAAGTCATCTAGAAAGGTTCCCCTTCCAGATCCC AGTGCTCTTCTGTCCTCTTTCTTCCTCCTCTTCCTCAGCAGAGATATGAGAAAGTGCTGG CCTATGAAGATCATAGTTGAAGCAGCTGGCGCTGGAGTTGCTTTGTGAATTCACCAGAGA CCCTAAGATCTTTTGTTGCATCTGGGCCATGCTCAGTGTCTCTGGCTCCAGAGTGGTTTG AATGACCCCAGGTTTCCTGGCGTAGGTTATCCCCAGAGACATGTGGCTTCACTCACGGGT TTCCCATCAACTTTCCCTCCAAAGCTGTGCACATCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 791-904, + strand, RNAz p=0.938011 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 791-904, + strand, RNAz p=0.938011 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK095947, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 107-333, gnl|bosTau2|chr17 (44213363-44213141) | |
| 107-333, gnl|Hg17|chr22 (29907586-29907810) | |
| 107-333, gnl|Mm7|chr11 (3384624-3384403) | |
| 350-466, gnl|bosTau2|chr17 (44208352-44208236) | |
| 350-466, gnl|canFam2|chr26 (27198693-27198823) | |
| 350-466, gnl|danRer3|chrNA (140446155-140446035) | |
| 350-466, gnl|dasNov1|scaffold_1084 (61281-61411) | |
| 350-466, gnl|echTel1|scaffold_314346 (31739-31869) | |
| 350-466, gnl|fr1|chrUn (66446098-66445973) | |
| 350-466, gnl|galGal2|chr15 (9021424-9021294) | |
| 350-466, gnl|hg17|chr22 (29916004-29916134) | |
| 350-466, gnl|Hg17|chr22 (29916006-29916122) | |
| 350-466, gnl|loxAfr1|scaffold_92775 (4239-4109) | |
| 350-466, gnl|mm7|chr11 (3378688-3378559) | |
| 350-466, gnl|Mm7|chr11 (3378684-3378568) | |
| 350-466, gnl|monDom2|scaffold_141 (82961-83094) | |
| 350-466, gnl|oryCun1|scaffold_178036 (33561-33432) | |
| 350-466, gnl|panTro1|chr23 (30016211-30016341) | |
| 350-466, gnl|rheMac2|chr10 (75077287-75077417) | |
| 350-466, gnl|rn3|chr14 (84073045-84072916) | |
| 350-466, gnl|tetNig1|chr4 (1737300-1737178) | |
| 350-466, gnl|xenTro1|scaffold_169 (21629-21758) | |
| 632-1436, gnl|bosTau2|chr17 (44200602-44199788) | |
| 632-1436, gnl|Hg17|chr22 (29925022-29925875) | |
| 632-1436, gnl|Mm7|chr11 (3370097-3369353) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 107-333, gnl|bosTau2|chr17 (44213363-44213141) | |
| 107-333, gnl|Hg17|chr22 (29907586-29907810) | |
| 107-333, gnl|Mm7|chr11 (3384624-3384403) | |
| 350-466, gnl|bosTau2|chr17 (44208352-44208236) | |
| 350-466, gnl|canFam2|chr26 (27198693-27198823) | |
| 350-466, gnl|danRer3|chrNA (140446155-140446035) | |
| 350-466, gnl|dasNov1|scaffold_1084 (61281-61411) | |
| 350-466, gnl|echTel1|scaffold_314346 (31739-31869) | |
| 350-466, gnl|fr1|chrUn (66446098-66445973) | |
| 350-466, gnl|galGal2|chr15 (9021424-9021294) | |
| 350-466, gnl|hg17|chr22 (29916004-29916134) | |
| 350-466, gnl|Hg17|chr22 (29916006-29916122) | |
| 350-466, gnl|loxAfr1|scaffold_92775 (4239-4109) | |
| 350-466, gnl|mm7|chr11 (3378688-3378559) | |
| 350-466, gnl|Mm7|chr11 (3378684-3378568) | |
| 350-466, gnl|monDom2|scaffold_141 (82961-83094) | |
| 350-466, gnl|oryCun1|scaffold_178036 (33561-33432) | |
| 350-466, gnl|panTro1|chr23 (30016211-30016341) | |
| 350-466, gnl|rheMac2|chr10 (75077287-75077417) | |
| 350-466, gnl|rn3|chr14 (84073045-84072916) | |
| 350-466, gnl|tetNig1|chr4 (1737300-1737178) | |
| 350-466, gnl|xenTro1|scaffold_169 (21629-21758) | |
| 632-1436, gnl|bosTau2|chr17 (44200602-44199788) | |
| 632-1436, gnl|Hg17|chr22 (29925022-29925875) | |
| 632-1436, gnl|Mm7|chr11 (3370097-3369353) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nco (0.161734) | |
| cli (0.152812) | |
| ova (0.129132) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| cli (0.152812) | |
| ova (0.129132) | |
| ebs (0.118301) |