Non-Coding RNA Search

Ss1.1-Pig4-TMW8042G05.5

Sequence:


               
               ACTACTCTGCAGGCAAAAGTCTTCAAAATTCTTCAGTTAACCTTTTTGATTCATCATTTC
TCTTTCAGAATGAACAAATGTTCTCAACTAAGCGATGTGAGATCACAACAAAGAGATTTG
CTTGTTTTAAGCACCATCCTTTCTACTTTTATGTATTTTAAAGTGTGGTCAGTATTTCCT
CCCTGTACTTTATAAACAGGAACCACCTTGGGGTGGTTGGTACCCCTGGCAAAGCTGATC
CGTCCACACAAACTCCTACGTATGTGTGACTTTAGGTGTATGTGGAGTCAGTGGTGACAA
GAAGGTGATCTAGAAGTAATTCTCTTGCTTCCCCGAAGGCCGGTGAGCCAGTCTCATGGC
ATGTTTGATGCATGAGCCCCCTCTGTCATGACATTTTCACTAGAACGTTAGTAAACAGCC
TAACTACCTCATGCGACATTGGCTGTGGACAATCCGTGTCAGATGAGACATGCGTTAAAG
TTGATTTACTCTGGTTAATAGGTTGAATAAAATGATGTCTCTATAAAGAAGAAACACATT
AGACCAGATGCCAAAGGCTACAATGTACATAGATTTCCTTGGATTGCTTTTTTAAGTCAA
TGTTTCATTCCACCCCCAGTATTATCTGGAATATCTGTGGTTTCATAGATCCATGCACTT
TGAATATCTGTCACATGCCGTCTGACGTTAGCTGTTCTGAATGAGCATTATAATGACAGT
TGAAAGCAAGTATCCAGTGGTTTGCTGATTTCTTAATTTTAAAGGACCTTTACTTAGAAT
ATAATGTGTTGGAGCCTTTAAGGATCAACTGATAAATGAGAATTTCATGTGTAGGTTTCA
TGTAAAACTCTGTCCAAGTTCTTACTCTGTCTCTTGCAGGGAAGGGGAACAAGGGAGGGA
TTTACTTTTTTTGAAACATGTTTGAAAATGTCTGTCAGATTTTATATTCATTAGTTATAA
TAAACTTATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTACTCTGCAGGCAAAAGTCTTCAAAATTCTTCAGTTAACCTTTTTGATTCATCATTTC
TCTTTCAGAATGAACAAATGTTCTCAACTAAGCGATGTGAGATCACAACAAAGAGATTTG
CTTGTTTTAAGCACCATCCTTTCTACTTTTATGTATTTTAAAGTGTGGTCAGTATTTCCT
CCCTGTACTTTATAAACAGGAACCACCTTGGGGTGGTTGGTACCCCTGGCAAAGCTGATC
CGTCCACACAAACTCCTACGTATGTGTGACTTTAGGTGTATGTGGAGTCAGTGGTGACAA
GAAGGTGATCTAGAAGTAATTCTCTTGCTTCCCCGAAGGCCGGTGAGCCAGTCTCATGGC
ATGTTTGATGCATGAGCCCCCTCTGTCATGACATTTTCACTAGAACGTTAGTAAACAGCC
TAACTACCTCATGCGACATTGGCTGTGGACAATCCGTGTCAGATGAGACATGCGTTAAAG
TTGATTTACTCTGGTTAATAGGTTGAATAAAATGATGTCTCTATAAAGAAGAAACACATT
AGACCAGATGCCAAAGGCTACAATGTACATAGATTTCCTTGGATTGCTTTTTTAAGTCAA
TGTTTCATTCCACCCCCAGTATTATCTGGAATATCTGTGGTTTCATAGATCCATGCACTT
TGAATATCTGTCACATGCCGTCTGACGTTAGCTGTTCTGAATGAGCATTATAATGACAGT
TGAAAGCAAGTATCCAGTGGTTTGCTGATTTCTTAATTTTAAAGGACCTTTACTTAGAAT
ATAATGTGTTGGAGCCTTTAAGGATCAACTGATAAATGAGAATTTCATGTGTAGGTTTCA
TGTAAAACTCTGTCCAAGTTCTTACTCTGTCTCTTGCAGGGAAGGGGAACAAGGGAGGGA
TTTACTTTTTTTGAAACATGTTTGAAAATGTCTGTCAGATTTTATATTCATTAGTTATAA
TAAACTTATTTT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-248, gnl|bosTau2|chr12 (19831165-19831407)
               

               
               1-248, gnl|Hg17|chr7 (29896510-29896741)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-248, gnl|bosTau2|chr12 (19831165-19831407)
               

               
               1-248, gnl|Hg17|chr7 (29896510-29896741)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               ova (0.516529)
               

               
               thg (0.507164)
               

               
               mgp (0.461361)
               

               
               sug (0.381874)
               

               
               cte (0.29274)
               

               
               kid (0.259471)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.516529)
               

               
               thg (0.507164)
               

               
               mgp (0.461361)
               

               
               sug (0.381874)
               

               
               cte (0.29274)
               

               
               kid (0.259471)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-248, gnl\|bosTau2\|chr12 (19831165-19831407)
	1-248, gnl\|Hg17\|chr7 (29896510-29896741)

	ova (0.516529)
	thg (0.507164)
	mgp (0.461361)
	sug (0.381874)
	cte (0.29274)
	kid (0.259471)
	sin (0.174948)
	fhi (0.169578)
	tbr (0.154178)
	isp (0.150376)
	lin (0.145603)
	csk (0.140746)
	ret (0.128733)
	ese (0.126502)
	tra (0.123092)
	spc (0.113366)