Non-Coding RNA Search

Ss1.1-Pig4-TMW8042G12.5

Sequence:


               
               TTGACAAGGGGTGAGCTGATTGCTAATTTACCATTAAATTTACCATTTAATTCTGTCAGA
AGCAGGCAAAACAATTTCTCATCTTGGATAATCAGATGCAAAGTCATCTATGAACTTAGA
GCTGAAGTTAGAAATAATATAAATGGCCCTTTCAACCTTGACCAGCTGAAAATATCTAAT
AAATTTTTTTTAAGTGAAAGTATATGATTTTTCACACCTAGCTATTTGAGAGTCTGGTGT
TAATGCAATCTTTCTAGTGAGAAATTGTTACTAGAAGCATGGGAGTGAAATAGTATGAAA
TGGTGAGTGCTTCATCATATGACTGTAGGTACTTGGGCTGGTGCAAACTTGATTCCCTTT
CATGGCCCTTTTTAGGAGCTGTTAAAATATTATCACTGAAAATCCAGTACCATTTTTTAT
TACATATACTAGGAAATAGCCAGATTCACTTGAGAGCTTCTCAACTTTATGAAGCGCTCT
CCTATTCTAATTGAAATTTACTAGAGTTGAATGTGGTATAAAGCCACTTAGCCTGTGTGT
TGGACAAAAAAAAAATTAACATCATGATAAATTCCACATGTTAAGAGAATTCTTGTAGGC
TTTTCAAAATGTTTTATTTTCATTTAGGTTTAAGGAATATGTGTTATGCAGGGAGGCAGA
TGAGATGAATGTGTTGTAGCAGACAATTTTTTAAAATGGTGTTAGACTTGAATTCATCCA
GTTATTGTTTGAATGAGGGTGGGTGGGTAGGAAGATAACAAAATTACTGTTAGTGTTTCT
TTCCTTAAGGAAAAAGATGTGAATCCCAGCCTTATTTCAGGGAAGCCTTTGAAGCTATAT
GATGGACATAAGTCTAATTTGTATGTATGTTTCATTACATTGCTCTTAAGACTACTGAGG
TGGCAGTTTAATTCTTAAAAACAATAAAATGAAAGCATAAATACCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGACAAGGGGTGAGCTGATTGCTAATTTACCATTAAATTTACCATTTAATTCTGTCAGA
AGCAGGCAAAACAATTTCTCATCTTGGATAATCAGATGCAAAGTCATCTATGAACTTAGA
GCTGAAGTTAGAAATAATATAAATGGCCCTTTCAACCTTGACCAGCTGAAAATATCTAAT
AAATTTTTTTTAAGTGAAAGTATATGATTTTTCACACCTAGCTATTTGAGAGTCTGGTGT
TAATGCAATCTTTCTAGTGAGAAATTGTTACTAGAAGCATGGGAGTGAAATAGTATGAAA
TGGTGAGTGCTTCATCATATGACTGTAGGTACTTGGGCTGGTGCAAACTTGATTCCCTTT
CATGGCCCTTTTTAGGAGCTGTTAAAATATTATCACTGAAAATCCAGTACCATTTTTTAT
TACATATACTAGGAAATAGCCAGATTCACTTGAGAGCTTCTCAACTTTATGAAGCGCTCT
CCTATTCTAATTGAAATTTACTAGAGTTGAATGTGGTATAAAGCCACTTAGCCTGTGTGT
TGGACAAAAAAAAAATTAACATCATGATAAATTCCACATGTTAAGAGAATTCTTGTAGGC
TTTTCAAAATGTTTTATTTTCATTTAGGTTTAAGGAATATGTGTTATGCAGGGAGGCAGA
TGAGATGAATGTGTTGTAGCAGACAATTTTTTAAAATGGTGTTAGACTTGAATTCATCCA
GTTATTGTTTGAATGAGGGTGGGTGGGTAGGAAGATAACAAAATTACTGTTAGTGTTTCT
TTCCTTAAGGAAAAAGATGTGAATCCCAGCCTTATTTCAGGGAAGCCTTTGAAGCTATAT
GATGGACATAAGTCTAATTTGTATGTATGTTTCATTACATTGCTCTTAAGACTACTGAGG
TGGCAGTTTAATTCTTAAAAACAATAAAATGAAAGCATAAATACCAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               37-951, gnl|bosTau2|chr20 (6213924-6214819)
               

               
               37-951, gnl|Hg17|chrX (22053485-22054374)
               

               
               37-951, gnl|Mm7|chrX (151923382-151922224)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-951, gnl|bosTau2|chr20 (6213924-6214819)
               

               
               37-951, gnl|Hg17|chrX (22053485-22054374)
               

               
               37-951, gnl|Mm7|chrX (151923382-151922224)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	37-951, gnl\|bosTau2\|chr20 (6213924-6214819)
	37-951, gnl\|Hg17\|chrX (22053485-22054374)
	37-951, gnl\|Mm7\|chrX (151923382-151922224)

	mgp (0.230681)
	sin (0.174948)
	cje (0.165235)
	csp (0.161186)
	ski (0.146735)
	spl (0.143184)
	sug (0.127291)
	bla (0.124347)