Non-Coding RNA Search

Ss1.1-Pig4-TMW8042G21.5

Sequence:


               
               TTCACAGCGTCCCTGGGGCATCTCCGGAGCCAGGCTGGTGCAGGCGCCGAGCACAGGCAC
TGAGCCCGCTCGCCCGCTCCCGCCCAGGGGCCCAGACAACACCCGGGTCCGGAGGGAAGG
CCTGTCGTGTCATGATGCTGCCTCTCAGCACCATCGAGGGCAAGGACACCCCCACCGAGG
AGGTGAAGACCAAGCCACCTGAGAAAGGAGTCCTGTTTTTTGAGAACCACGATAAGGCGC
CAAGGAAGCCCCCCAGAATGAAGGGAACGATGTCGTTCAGATTCCTGCCGTTCTGTACTG
TGCTACCATGGGAATCTTCTGAGGCAGCCGTGGGCGGTGGCCCAGAACAGACACTGAGCA
AGCGCATCCGCTCCTGCCCGGCAGCCTGGAGAGAACCTGGGTCTGGAGGGAAGGCCTGTC
GTGTCATGATGCTGCCTCTCAGCACCATCGAGGGCAAGGACACCCCCACCGAGGAGGTGA
AGACCAAGCCACCTGAGAAAGGAGCCCTGCTCTCTGCGACCCCCGAGGAGCCGCCAAAGA
AGCCCCCCAGAATGAAGGGGAGGATGTCATTCCGAGTGCTGCCCATCTGCCCGATGCCAA
GTGTCTGCTTCACCTATTCTGTGGAGCAAGATGACTCTGACTTGGATGCCCAAGCTCCTC
CTGAACCTTCCAAGCCTGACTCGAATTGCACCTTCGTTCCTCTGCCTGTTCTGGAGTTTC
GTGAAGTCAAGGTGTGGGAGTGCCCCCTGTGCTGTCTCAGCTTTGTCTCTGCTTCCTAAT
TCCTGAGATCCCTCTGCTTCCTGCTCTTGACTGGGCACCCCCAAACCATGCATGCTGGGC
TCCTGTGATGTAAACCCCCAAATACAGCTGCTTAAATAAACGGAAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACAGCGTCCCTGGGGCATCTCCGGAGCCAGGCTGGTGCAGGCGCCGAGCACAGGCAC
TGAGCCCGCTCGCCCGCTCCCGCCCAGGGGCCCAGACAACACCCGGGTCCGGAGGGAAGG
CCTGTCGTGTCATGATGCTGCCTCTCAGCACCATCGAGGGCAAGGACACCCCCACCGAGG
AGGTGAAGACCAAGCCACCTGAGAAAGGAGTCCTGTTTTTTGAGAACCACGATAAGGCGC
CAAGGAAGCCCCCCAGAATGAAGGGAACGATGTCGTTCAGATTCCTGCCGTTCTGTACTG
TGCTACCATGGGAATCTTCTGAGGCAGCCGTGGGCGGTGGCCCAGAACAGACACTGAGCA
AGCGCATCCGCTCCTGCCCGGCAGCCTGGAGAGAACCTGGGTCTGGAGGGAAGGCCTGTC
GTGTCATGATGCTGCCTCTCAGCACCATCGAGGGCAAGGACACCCCCACCGAGGAGGTGA
AGACCAAGCCACCTGAGAAAGGAGCCCTGCTCTCTGCGACCCCCGAGGAGCCGCCAAAGA
AGCCCCCCAGAATGAAGGGGAGGATGTCATTCCGAGTGCTGCCCATCTGCCCGATGCCAA
GTGTCTGCTTCACCTATTCTGTGGAGCAAGATGACTCTGACTTGGATGCCCAAGCTCCTC
CTGAACCTTCCAAGCCTGACTCGAATTGCACCTTCGTTCCTCTGCCTGTTCTGGAGTTTC
GTGAAGTCAAGGTGTGGGAGTGCCCCCTGTGCTGTCTCAGCTTTGTCTCTGCTTCCTAAT
TCCTGAGATCCCTCTGCTTCCTGCTCTTGACTGGGCACCCCCAAACCATGCATGCTGGGC
TCCTGTGATGTAAACCCCCAAATACAGCTGCTTAAATAAACGGAAGTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61820275|ref|XP_611351.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61820275|ref|XP_611351.1|

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               596-881, gnl|bosTau2|chr18 (55606247-55605961)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               596-881, gnl|bosTau2|chr18 (55606247-55605961)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               hlv (1.11405)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (1.11405)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	hlv (1.11405)
	ebs (0.236602)
	ece (0.229305)
	hea (0.204499)
	fcc (0.197785)
	hyp (0.142837)
	pla (0.133672)
	pgl (0.118483)
	spc (0.113366)
	eje (0.0988338)