Non-Coding RNA Search

Ss1.1-Pig4-TMW8042G24.3

Sequence:


               
               GGATTTTTTTAAACCTTTGTTTTTCATGTTAAACAATACGCCATTAGGTTGGTTGTCCTG
CCCAGTCTCCTGTTTTTAAAAATTGCCTTTGTAAAGTGTGACATATTGGCCTGCAGCAGA
AACTGTCCTTGACAAAGTCACAGATAGAACGTAAATGTTTCCAAGGCACTCTGTGCTTTA
CCCTCTGCTTCTTTGGATGCTGTCCTGGGGCTAAGTGTAAATTTCCGCTTGGAACAATCC
CCACAGCAGGTGTCTCCACATCCCTTCCTGCCCCTATGTATGTTTCTGTGGATGCCAGTG
GGGTGGGAAGCAGGCACCCGGGGAGGGGCATTGGTTAGCGTGCCTCCTTTCTGGGGATTC
ATGCCTACCATACTCCTGAGAGTTTCTGAGACCCTCCAGGATATTTTTTCGGCATACCCC
ACTGCAAAAAGAAAGGGCTTGGTAGGTTGAAACATCGTTACTTGAGAATTGGGGGGCATG
AGCTGGAACTTTTTAGGAGATAATTCCACCACTACAGCTCTTGAAAGGAGGACCAGGCAC
TTTTGCTTAGAACCCACAAAGTTGCCGAATGCAGGGTGGATTTCCCGAGGCTCTGGTCAT
TGCCCTGGGCAGGGCCGGGACAGAGCCAGTCAGTGGGTCTGTTTTCCTTATAATTCTTGG
GTTACAAACTTCAGTTTCAGGGAATTTTAAGTCAACAACAGGTAGAATGAATAAATACTT
GGTTACCTAATAATAATGTGAATTGCTACAGAATTATTATTATGTAAGATAACAAAAACT
TTATGCAGATACTTTAGTTATAAATTGATGTAAAATATTGACCTTTTTTTAAAGGAAGGG
GAGAACAGTATCTTGTTCACTTATTATGCAATCAATCAGTAAATGTTTTAAAATGATACT
GTAAGAGAGTTTGTAAGAAGAGAGCATGGATGGGCCAGTCGGGGTAGTTAGGAAGATCAG
TCTGGTTGTTCCATCCCAGAAGAGGGAGAGAAGGAGGTGAGAGGGAATCAGAACGTACTA
AGTTGATTCCTTGGTGACATGTGCAATGGAGAATGGTAGAATTTATTTTGAGAGCCAAGG
GGACTTGATGGTTATAAATAAAGTTGCTTTTAGTGATGGAGTTTATAGACAGATCATGTT
GTTCCGAAAGATGTGAATAGGATCCATGATAGCAAGTTGATTCAGAATAATGTAGATATT
TAGATTAGCAAGTCTTGATCATTTGATTTCTTAGACTGAGGTTTTAATTGAATTTCATTA
TTGTCTCCCGGTAGTACACAAAGCATCGGGATTAGGAAATTAGCCATTTTGGATTCTGCC
TGCCACAAACAGACCTATTCTAAACAGTGCTATTAAATTTTAGACTGTTGTTCAAATATT
TTATTTTCTCCTACAACTTTTTATTACGATGAACAATTAAGACCATTTAAAACATGGGAG
TACAAGTATTTTTTTGAATTAAATTAACTTGCAAAAACCAAATTTGCAGTGGTTGGGTGG
TTTCTAGACAGACTTTGGTATCAATTTAAAACCAAGATAATTTTTATATTCTTTCCAACA
GAATTTCATGACAACTCCTGCAGTTTTCTTAACCTACAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTTTTTTAAACCTTTGTTTTTCATGTTAAACAATACGCCATTAGGTTGGTTGTCCTG
CCCAGTCTCCTGTTTTTAAAAATTGCCTTTGTAAAGTGTGACATATTGGCCTGCAGCAGA
AACTGTCCTTGACAAAGTCACAGATAGAACGTAAATGTTTCCAAGGCACTCTGTGCTTTA
CCCTCTGCTTCTTTGGATGCTGTCCTGGGGCTAAGTGTAAATTTCCGCTTGGAACAATCC
CCACAGCAGGTGTCTCCACATCCCTTCCTGCCCCTATGTATGTTTCTGTGGATGCCAGTG
GGGTGGGAAGCAGGCACCCGGGGAGGGGCATTGGTTAGCGTGCCTCCTTTCTGGGGATTC
ATGCCTACCATACTCCTGAGAGTTTCTGAGACCCTCCAGGATATTTTTTCGGCATACCCC
ACTGCAAAAAGAAAGGGCTTGGTAGGTTGAAACATCGTTACTTGAGAATTGGGGGGCATG
AGCTGGAACTTTTTAGGAGATAATTCCACCACTACAGCTCTTGAAAGGAGGACCAGGCAC
TTTTGCTTAGAACCCACAAAGTTGCCGAATGCAGGGTGGATTTCCCGAGGCTCTGGTCAT
TGCCCTGGGCAGGGCCGGGACAGAGCCAGTCAGTGGGTCTGTTTTCCTTATAATTCTTGG
GTTACAAACTTCAGTTTCAGGGAATTTTAAGTCAACAACAGGTAGAATGAATAAATACTT
GGTTACCTAATAATAATGTGAATTGCTACAGAATTATTATTATGTAAGATAACAAAAACT
TTATGCAGATACTTTAGTTATAAATTGATGTAAAATATTGACCTTTTTTTAAAGGAAGGG
GAGAACAGTATCTTGTTCACTTATTATGCAATCAATCAGTAAATGTTTTAAAATGATACT
GTAAGAGAGTTTGTAAGAAGAGAGCATGGATGGGCCAGTCGGGGTAGTTAGGAAGATCAG
TCTGGTTGTTCCATCCCAGAAGAGGGAGAGAAGGAGGTGAGAGGGAATCAGAACGTACTA
AGTTGATTCCTTGGTGACATGTGCAATGGAGAATGGTAGAATTTATTTTGAGAGCCAAGG
GGACTTGATGGTTATAAATAAAGTTGCTTTTAGTGATGGAGTTTATAGACAGATCATGTT
GTTCCGAAAGATGTGAATAGGATCCATGATAGCAAGTTGATTCAGAATAATGTAGATATT
TAGATTAGCAAGTCTTGATCATTTGATTTCTTAGACTGAGGTTTTAATTGAATTTCATTA
TTGTCTCCCGGTAGTACACAAAGCATCGGGATTAGGAAATTAGCCATTTTGGATTCTGCC
TGCCACAAACAGACCTATTCTAAACAGTGCTATTAAATTTTAGACTGTTGTTCAAATATT
TTATTTTCTCCTACAACTTTTTATTACGATGAACAATTAAGACCATTTAAAACATGGGAG
TACAAGTATTTTTTTGAATTAAATTAACTTGCAAAAACCAAATTTGCAGTGGTTGGGTGG
TTTCTAGACAGACTTTGGTATCAATTTAAAACCAAGATAATTTTTATATTCTTTCCAACA
GAATTTCATGACAACTCCTGCAGTTTTCTTAACCTACAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1285-1400, - strand, RNAz p=0.625915

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1285-1400, - strand, RNAz p=0.625915

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-329, gnl|bosTau2|chr22 (28630837-28631159)
               

               
               4-329, gnl|Hg17|chr3 (63961075-63961373)
               

               
               4-329, gnl|Mm7|chr14 (11923071-11923350)
               


               
               466-1608, gnl|bosTau2|chr22 (28631354-28632495)
               

               
               466-1608, gnl|Hg17|chr3 (63961583-63962732)
               

               
               466-1608, gnl|Mm7|chr14 (11923540-11924659)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-329, gnl|bosTau2|chr22 (28630837-28631159)
               

               
               4-329, gnl|Hg17|chr3 (63961075-63961373)
               

               
               4-329, gnl|Mm7|chr14 (11923071-11923350)
               


               
               466-1608, gnl|bosTau2|chr22 (28631354-28632495)
               

               
               466-1608, gnl|Hg17|chr3 (63961583-63962732)
               

               
               466-1608, gnl|Mm7|chr14 (11923540-11924659)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cbl (1.03318)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.03318)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               thg (0.126791)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	4-329, gnl\|bosTau2\|chr22 (28630837-28631159)
	4-329, gnl\|Hg17\|chr3 (63961075-63961373)
	4-329, gnl\|Mm7\|chr14 (11923071-11923350)

	466-1608, gnl\|bosTau2\|chr22 (28631354-28632495)
	466-1608, gnl\|Hg17\|chr3 (63961583-63962732)
	466-1608, gnl\|Mm7\|chr14 (11923540-11924659)

	cbl (1.03318)
	fty (0.17584)
	duo (0.172801)
	spl (0.143184)
	nmm (0.132802)
	thg (0.126791)
	cty (0.10408)
	ldo (0.0970026)