Non-Coding RNA Search

Ss1.1-Pig4-TMW8042H02.3

Sequence:


               
               AGGGAAAGGGGCAAAAAAGAAAGCGCAAGAAATCCCGTCCCTGTGGGCCTTGCTCAGAGC
GGAGAAAGCATTTGTTTGTACAAGATCCGCAGACGTGTAAATGTTCCTGCAAAAACACAG
ACTCGCGTTGCAAGGCGAGGCAGCTTGAGTTAAACGAACGTACTTGCAGATGTGACAAGC
CGAGGCGGTGAGCCAGGCTGGAGGAAGGAGCCTCCCTCAGCGTTTTGGGCACCAGACGTC
TCACCAGGAAAGACTGACACAGAACGACCCGTAGCCGCCGCCACCACCACACCACCGCCA
TCGACAGAACAATCCTGAATCCAGAAACCTGACGTGAAGGAAGAGGAGGCTGAGCGCAGA
GCACTTTGGGTCCGGAGCGCGCGACTCCGGCAGAGGCATTCCCGGGCCGGTGACCCAGCA
CGGCCCCTCTTGGGATTGGATGGCCGTTTTTGTTTCTCTTGCTGCTAAATCACCGAGCCC
GGAAGATTAGAGAGTTTTATTTCTGGGGTTCCTATAGACACACCCACCCACATACATACA
TTATATATATATATATATATTATATATATAAAAATAAATATATATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGAAAGGGGCAAAAAAGAAAGCGCAAGAAATCCCGTCCCTGTGGGCCTTGCTCAGAGC
GGAGAAAGCATTTGTTTGTACAAGATCCGCAGACGTGTAAATGTTCCTGCAAAAACACAG
ACTCGCGTTGCAAGGCGAGGCAGCTTGAGTTAAACGAACGTACTTGCAGATGTGACAAGC
CGAGGCGGTGAGCCAGGCTGGAGGAAGGAGCCTCCCTCAGCGTTTTGGGCACCAGACGTC
TCACCAGGAAAGACTGACACAGAACGACCCGTAGCCGCCGCCACCACCACACCACCGCCA
TCGACAGAACAATCCTGAATCCAGAAACCTGACGTGAAGGAAGAGGAGGCTGAGCGCAGA
GCACTTTGGGTCCGGAGCGCGCGACTCCGGCAGAGGCATTCCCGGGCCGGTGACCCAGCA
CGGCCCCTCTTGGGATTGGATGGCCGTTTTTGTTTCTCTTGCTGCTAAATCACCGAGCCC
GGAAGATTAGAGAGTTTTATTTCTGGGGTTCCTATAGACACACCCACCCACATACATACA
TTATATATATATATATATATTATATATATAAAAATAAATATATATATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22219059|pdb|1KMX|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22219059|pdb|1KMX|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               312-588, - strand, RNAz p=0.948046

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-588, - strand, RNAz p=0.948046

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               166-588, gnl|bosTau2|chr23 (18072302-18071867)
               

               
               166-588, gnl|Hg17|chr6 (43860252-43860680)
               

               
               166-588, gnl|Mm7|chr17 (44148287-44147888)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-588, gnl|bosTau2|chr23 (18072302-18071867)
               

               
               166-588, gnl|Hg17|chr6 (43860252-43860680)
               

               
               166-588, gnl|Mm7|chr17 (44148287-44147888)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cty (0.31224)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)

	166-588, gnl\|bosTau2\|chr23 (18072302-18071867)
	166-588, gnl\|Hg17\|chr6 (43860252-43860680)
	166-588, gnl\|Mm7\|chr17 (44148287-44147888)