Non-Coding RNA Search

Ss1.1-Pig4-TMW8042H03.3

Sequence:


               
               GAACTTTACAAAAAGAACCAGACAGCTTAAGCTAGCATCACTTCTGTTTTCAATTTGCCT
TTTAAATGAGTTTTGGCTCATTGATATGCTTGCATACACACACACAGACATATGTATAAA
TATACCATTTTATATATATATATATATATATATATATAATATTACTATTAATATATTGTC
TCTTTTTTAAAAGAGTCAGTATATTGATTAAATTTAGGCAGTGAAAACACTTCCACAGTG
AGGTTGAAAATAATAAAGAAAAATCTTATTGCTACTGTTGATTATCTTAAAAAGTTGACA
TTTTCTTTCTAAAGTGTTATGTAAATATGTGTTCTATATGTTGGTTATAAATTATCCTGT
CATGGAACATTTAAATTGTTAAAATGATGGTTTTCTTATTACTTCATAGTTTGTTAGTTA
CCGTCACTAATACTTGACCACTACATTGTGCTATATGTGAATGTGTAAATAAATATTGTA
GGTTGTCACAAAAATCTATGAATATCACATGGAACTATTATAAAATAATTTAAGGACAAA
TTTAATACTGTGTCCATAATAATTTCTGAAAAAGTTGGGGATATCCTATTTTTAGATGAG
TTTGTTTGAGGGTATTGTCTTCTAGTAATGTAGATGAGCTTTGTATTTTTATATTATGTA
ATTTGAATTCATAGCTTTTCATTACTGACTTCTTTAAACAGAGGCATTTATATAGAGCTG
TGTTTTTTTATTTATGAATTAATACATGAAAACTGAATGTTTCATTGTCCAGTACACTCT
TATTTTTCTAAGGAATAAACGAGTCTGATGCATTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACTTTACAAAAAGAACCAGACAGCTTAAGCTAGCATCACTTCTGTTTTCAATTTGCCT
TTTAAATGAGTTTTGGCTCATTGATATGCTTGCATACACACACACAGACATATGTATAAA
TATACCATTTTATATATATATATATATATATATATATAATATTACTATTAATATATTGTC
TCTTTTTTAAAAGAGTCAGTATATTGATTAAATTTAGGCAGTGAAAACACTTCCACAGTG
AGGTTGAAAATAATAAAGAAAAATCTTATTGCTACTGTTGATTATCTTAAAAAGTTGACA
TTTTCTTTCTAAAGTGTTATGTAAATATGTGTTCTATATGTTGGTTATAAATTATCCTGT
CATGGAACATTTAAATTGTTAAAATGATGGTTTTCTTATTACTTCATAGTTTGTTAGTTA
CCGTCACTAATACTTGACCACTACATTGTGCTATATGTGAATGTGTAAATAAATATTGTA
GGTTGTCACAAAAATCTATGAATATCACATGGAACTATTATAAAATAATTTAAGGACAAA
TTTAATACTGTGTCCATAATAATTTCTGAAAAAGTTGGGGATATCCTATTTTTAGATGAG
TTTGTTTGAGGGTATTGTCTTCTAGTAATGTAGATGAGCTTTGTATTTTTATATTATGTA
ATTTGAATTCATAGCTTTTCATTACTGACTTCTTTAAACAGAGGCATTTATATAGAGCTG
TGTTTTTTTATTTATGAATTAATACATGAAAACTGAATGTTTCATTGTCCAGTACACTCT
TATTTTTCTAAGGAATAAACGAGTCTGATGCATTTAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               112-471, gnl|bosTau2|chr16 (26439589-26439939)
               

               
               112-471, gnl|Hg17|chr1 (167253869-167254223)
               

               
               112-471, gnl|Mm7|chr1 (163346610-163346270)
               


               
               512-819, gnl|bosTau2|chr16 (26440007-26440307)
               

               
               512-819, gnl|Hg17|chr1 (167254333-167254640)
               

               
               512-819, gnl|Mm7|chr1 (163346203-163345910)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-471, gnl|bosTau2|chr16 (26439589-26439939)
               

               
               112-471, gnl|Hg17|chr1 (167253869-167254223)
               

               
               112-471, gnl|Mm7|chr1 (163346610-163346270)
               


               
               512-819, gnl|bosTau2|chr16 (26440007-26440307)
               

               
               512-819, gnl|Hg17|chr1 (167254333-167254640)
               

               
               512-819, gnl|Mm7|chr1 (163346203-163345910)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               aor (0.195274)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               ret (0.128733)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               ret (0.128733)

	112-471, gnl\|bosTau2\|chr16 (26439589-26439939)
	112-471, gnl\|Hg17\|chr1 (167253869-167254223)
	112-471, gnl\|Mm7\|chr1 (163346610-163346270)

	512-819, gnl\|bosTau2\|chr16 (26440007-26440307)
	512-819, gnl\|Hg17\|chr1 (167254333-167254640)
	512-819, gnl\|Mm7\|chr1 (163346203-163345910)