Ss1.1-Pig4-TMW8042H12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCCACCAAAGATTTCCAACATCTCCTCGGATGTCACTGTGAATGAGGGCAGCAATGTG ACCCTGGTCTGCATGGCCAATGGCCGTCCTGAACCTGTTATCACCTGGAGACACCTTACA CCAACTGGAAGAGAACTTGAAGGAGAAGAAGAATATCTGGAGATCCTCGGCATCACCAGG GAGCAGTCAGGCAAATATGAGTGCAAAGCTGCCAATGAGGTCTCCTCGGCGGACGTCAAA CAAGTCAAGGTCACTGTGAACTATCCTCCCACTATCACGGAATCCAAGAGCAATGAAGCC ACCACAGGGCGAAAAGCTTCTCTCAAATGTGAGGCCTCGGCAGTGCCTGCTCCTGACTTT GAGTGGTACCGAGATGACACCAGGATAAACAGTGCCAATGGCCTTGAGATTAAGAGCACG GAGGGCCAGTCCTCCCTGACGGAAAAAAACGTCACTGAGGAGCACTATGGCAACTACACC TGCGTGGCTGCCAACAATCTGGGGGTCACCAACGCCAGCCTCGTCCTTTTCAAGCGTGTT TTACCCACAATCCCCCACCCCATTCAAGAAATTGGCACCACCGTGCACTTCAAGCAAAAA GGACCTGGGTCGGTGAGAGGAATAAACGGATCCATCAGTCTGGCCGTACCACTGTGGCTG CTGGCAGCATCTCTGCTCTGCCTTCTCAGCAAATGTTAATAGAATAAAAGTTTCAAAAGA ATAAAAAAAAAAAAAACCACACAAAAATGCGTCACACAGGATACAGAGAGAGAGAGCAAG GTGGGGGGAGACTGTTTATTTCACAACTTGTGTGTTTATAAATGAAGGGGGAAAATAAGA AAACGAAGAAGAAAATACAACATTTAAAACAGTTTTAAAGTCCATCAATAAAAATTGGAG TATAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCCACCAAAGATTTCCAACATCTCCTCGGATGTCACTGTGAATGAGGGCAGCAATGTG ACCCTGGTCTGCATGGCCAATGGCCGTCCTGAACCTGTTATCACCTGGAGACACCTTACA CCAACTGGAAGAGAACTTGAAGGAGAAGAAGAATATCTGGAGATCCTCGGCATCACCAGG GAGCAGTCAGGCAAATATGAGTGCAAAGCTGCCAATGAGGTCTCCTCGGCGGACGTCAAA CAAGTCAAGGTCACTGTGAACTATCCTCCCACTATCACGGAATCCAAGAGCAATGAAGCC ACCACAGGGCGAAAAGCTTCTCTCAAATGTGAGGCCTCGGCAGTGCCTGCTCCTGACTTT GAGTGGTACCGAGATGACACCAGGATAAACAGTGCCAATGGCCTTGAGATTAAGAGCACG GAGGGCCAGTCCTCCCTGACGGAAAAAAACGTCACTGAGGAGCACTATGGCAACTACACC TGCGTGGCTGCCAACAATCTGGGGGTCACCAACGCCAGCCTCGTCCTTTTCAAGCGTGTT TTACCCACAATCCCCCACCCCATTCAAGAAATTGGCACCACCGTGCACTTCAAGCAAAAA GGACCTGGGTCGGTGAGAGGAATAAACGGATCCATCAGTCTGGCCGTACCACTGTGGCTG CTGGCAGCATCTCTGCTCTGCCTTCTCAGCAAATGTTAATAGAATAAAAGTTTCAAAAGA ATAAAAAAAAAAAAAACCACACAAAAATGCGTCACACAGGATACAGAGAGAGAGAGCAAG GTGGGGGGAGACTGTTTATTTCACAACTTGTGTGTTTATAAATGAAGGGGGAAAATAAGA AAACGAAGAAGAAAATACAACATTTAAAACAGTTTTAAAGTCCATCAATAAAAATTGGAG TATAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 382-532, - strand, RNAz p=0.987858 | |
| 709-818, + strand, RNAz p=0.510971 | |
| 719-818, - strand, RNAz p=0.960492 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 382-532, - strand, RNAz p=0.987858 | |
| 709-818, + strand, RNAz p=0.510971 | |
| 719-818, - strand, RNAz p=0.960492 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 127-262, gnl|bosTau2|chr1 (35661052-35660917) | |
| 127-262, gnl|canFam2|chr33 (22925273-22925428) | |
| 127-262, gnl|danRer3|chr10 (31796160-31796037) | |
| 127-262, gnl|dasNov1|scaffold_2893 (44558-44404) | |
| 127-262, gnl|echTel1|scaffold_319636 (86509-86354) | |
| 127-262, gnl|fr1|chrUn (33847497-33847643) | |
| 127-262, gnl|galGal2|chr1 (76306771-76306616) | |
| 127-262, gnl|hg17|chr3 (117054012-117054167) | |
| 127-262, gnl|Hg17|chr3 (117054155-117054020) | |
| 127-262, gnl|loxAfr1|scaffold_24666 (2231-2366) | |
| 127-262, gnl|mm7|chr16 (41895130-41894975) | |
| 127-262, gnl|Mm7|chr16 (41894985-41895120) | |
| 127-262, gnl|monDom2|scaffold_24 (11318353-11318508) | |
| 127-262, gnl|oryCun1|scaffold_202141 (99852-100006) | |
| 127-262, gnl|panTro1|chr2 (118790958-118791113) | |
| 127-262, gnl|rheMac2|chr2 (35854074-35854229) | |
| 127-262, gnl|rn3|chr11 (60268915-60269070) | |
| 127-262, gnl|tetNig1|chr1 (12551445-12551592) | |
| 127-262, gnl|xenTro1|scaffold_775 (153516-153667) | |
| 382-532, gnl|bosTau2|chr1 (35650560-35650410) | |
| 382-532, gnl|canFam2|chr33 (22915125-22915323) | |
| 382-532, gnl|danRer3|chr16 (51893539-51893343) | |
| 382-532, gnl|dasNov1|scaffold_2893 (54819-54622) | |
| 382-532, gnl|echTel1|scaffold_319636 (97656-97457) | |
| 382-532, gnl|fr1|chrUn (110297908-110297724) | |
| 382-532, gnl|galGal2|chr1 (76311888-76311683) | |
| 382-532, gnl|hg17|chr3 (117043365-117043563) | |
| 382-532, gnl|Hg17|chr3 (117043532-117043382) | |
| 382-532, gnl|loxAfr1|scaffold_4087 (49528-49328) | |
| 382-532, gnl|mm7|chr16 (41905266-41905070) | |
| 382-532, gnl|Mm7|chr16 (41905097-41905247) | |
| 382-532, gnl|monDom2|scaffold_24 (11302357-11302549) | |
| 382-532, gnl|oryCun1|scaffold_202141 (89646-89842) | |
| 382-532, gnl|panTro1|chr2 (118780298-118780496) | |
| 382-532, gnl|rheMac2|chr2 (35843145-35843343) | |
| 382-532, gnl|rn3|chr11 (60258335-60258532) | |
| 382-532, gnl|tetNig1|chr1 (12541147-12541320) | |
| 382-532, gnl|xenTro1|scaffold_775 (149109-149298) | |
| 600-905, gnl|bosTau2|chr1 (35616220-35615915) | |
| 600-905, gnl|canFam2|chr33 (22882280-22882503) | |
| 600-905, gnl|dasNov1|scaffold_2893 (95589-95374) | |
| 600-905, gnl|echTel1|scaffold_319636 (137193-136921) | |
| 600-905, gnl|hg17|chr3 (117011618-117011852) | |
| 600-905, gnl|Hg17|chr3 (117011953-117011636) | |
| 600-905, gnl|loxAfr1|scaffold_4087 (83413-83172) | |
| 600-905, gnl|mm7|chr16 (41935011-41934793) | |
| 600-905, gnl|Mm7|chr16 (41934690-41934991) | |
| 600-905, gnl|monDom2|scaffold_24 (11256091-11256310) | |
| 600-905, gnl|oryCun1|scaffold_202141 (57762-57982) | |
| 600-905, gnl|panTro1|chr2 (118748440-118748676) | |
| 600-905, gnl|rheMac2|chr2 (35810958-35811199) | |
| 600-905, gnl|rn3|chr11 (60227909-60228134) | |
| 600-905, gnl|xenTro1|scaffold_775 (132032-132223) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 127-262, gnl|bosTau2|chr1 (35661052-35660917) | |
| 127-262, gnl|canFam2|chr33 (22925273-22925428) | |
| 127-262, gnl|danRer3|chr10 (31796160-31796037) | |
| 127-262, gnl|dasNov1|scaffold_2893 (44558-44404) | |
| 127-262, gnl|echTel1|scaffold_319636 (86509-86354) | |
| 127-262, gnl|fr1|chrUn (33847497-33847643) | |
| 127-262, gnl|galGal2|chr1 (76306771-76306616) | |
| 127-262, gnl|hg17|chr3 (117054012-117054167) | |
| 127-262, gnl|Hg17|chr3 (117054155-117054020) | |
| 127-262, gnl|loxAfr1|scaffold_24666 (2231-2366) | |
| 127-262, gnl|mm7|chr16 (41895130-41894975) | |
| 127-262, gnl|Mm7|chr16 (41894985-41895120) | |
| 127-262, gnl|monDom2|scaffold_24 (11318353-11318508) | |
| 127-262, gnl|oryCun1|scaffold_202141 (99852-100006) | |
| 127-262, gnl|panTro1|chr2 (118790958-118791113) | |
| 127-262, gnl|rheMac2|chr2 (35854074-35854229) | |
| 127-262, gnl|rn3|chr11 (60268915-60269070) | |
| 127-262, gnl|tetNig1|chr1 (12551445-12551592) | |
| 127-262, gnl|xenTro1|scaffold_775 (153516-153667) | |
| 382-532, gnl|bosTau2|chr1 (35650560-35650410) | |
| 382-532, gnl|canFam2|chr33 (22915125-22915323) | |
| 382-532, gnl|danRer3|chr16 (51893539-51893343) | |
| 382-532, gnl|dasNov1|scaffold_2893 (54819-54622) | |
| 382-532, gnl|echTel1|scaffold_319636 (97656-97457) | |
| 382-532, gnl|fr1|chrUn (110297908-110297724) | |
| 382-532, gnl|galGal2|chr1 (76311888-76311683) | |
| 382-532, gnl|hg17|chr3 (117043365-117043563) | |
| 382-532, gnl|Hg17|chr3 (117043532-117043382) | |
| 382-532, gnl|loxAfr1|scaffold_4087 (49528-49328) | |
| 382-532, gnl|mm7|chr16 (41905266-41905070) | |
| 382-532, gnl|Mm7|chr16 (41905097-41905247) | |
| 382-532, gnl|monDom2|scaffold_24 (11302357-11302549) | |
| 382-532, gnl|oryCun1|scaffold_202141 (89646-89842) | |
| 382-532, gnl|panTro1|chr2 (118780298-118780496) | |
| 382-532, gnl|rheMac2|chr2 (35843145-35843343) | |
| 382-532, gnl|rn3|chr11 (60258335-60258532) | |
| 382-532, gnl|tetNig1|chr1 (12541147-12541320) | |
| 382-532, gnl|xenTro1|scaffold_775 (149109-149298) | |
| 600-905, gnl|bosTau2|chr1 (35616220-35615915) | |
| 600-905, gnl|canFam2|chr33 (22882280-22882503) | |
| 600-905, gnl|dasNov1|scaffold_2893 (95589-95374) | |
| 600-905, gnl|echTel1|scaffold_319636 (137193-136921) | |
| 600-905, gnl|hg17|chr3 (117011618-117011852) | |
| 600-905, gnl|Hg17|chr3 (117011953-117011636) | |
| 600-905, gnl|loxAfr1|scaffold_4087 (83413-83172) | |
| 600-905, gnl|mm7|chr16 (41935011-41934793) | |
| 600-905, gnl|Mm7|chr16 (41934690-41934991) | |
| 600-905, gnl|monDom2|scaffold_24 (11256091-11256310) | |
| 600-905, gnl|oryCun1|scaffold_202141 (57762-57982) | |
| 600-905, gnl|panTro1|chr2 (118748440-118748676) | |
| 600-905, gnl|rheMac2|chr2 (35810958-35811199) | |
| 600-905, gnl|rn3|chr11 (60227909-60228134) | |
| 600-905, gnl|xenTro1|scaffold_775 (132032-132223) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) |