Non-Coding RNA Search

Ss1.1-Pig4-TMW8042I04.3

Sequence:


               
               GAGGCAGATATACCAGCATTTGCTGACTATCGGCCAACTGAAGTAACTGATTTAAAACCA
CCAGCACCACCACCTACCCCGTCCCCGGTGACCCCTGTTCCTCCAGCTCCCCAACCTGTA
GCCCCTACACCTGCAGCCACCCGCCCAGCTACTCCTGCTGGACCAAAGGGAAGGTTGTTT
GTTAGCCCTCTTGCAAAGAAATTGGCATCAGAGAAAGGCATTGACCTTACACAAATAAAA
GGGACAGGACCAGATGGCAGAATCATCAAGAAGGACATTGACTCCTTTGTGCCTACTAAA
GCTGCTCCTACTCCAGCAGCTGCTGTTCCTCCCCCGAGCCCAGGAGTGGCACCAGTTCCC
ACAGGGGTCTTCACAGATATCCCAATCAGCAACATTCGTCGAGTTATTGCACAGCGGTTA
ATGCAATCTAAGCAAACCATACCTCATTATTACCTTTCTGTTGATGTAAATATGGGAGAA
GTTTTGTTGGTACGGAAAGAACTTAATAAGATGTTAGAAGGGAGAAGCAAAATTTCTGTC
AATGATTTCATTATAAAAGCTTCAGCCTTGGCATGTTTAAAAGTTCCTGAAGCAAATTCT
TCTTGGCTGGACACAGTTATAAGACAAAATCATGTTGTTGATATCAGTGTCGCAGTCAGC
ACTCCTGCAGGACTCATCACACCTATTGTATTTAATGCACATATAAAAGGACTGGAAACC
ATTGCTAATGATGTTGTTTCTTTAGCAACCAAAGCACGAGAGGGTAAACTACAGCCACAT
GAGTTCCAGGGTGGCACTTTTACAATCTCGAATTTAGGAATGTTTGGAATTAAGAACTTC
TCTGCTATTATTAACCCTCCTCAAGCATGTATTTTGGCAGTTGGTGCTTCAGAGGATAGA
CTGTTTCCAGCGGATAATGAAAAAGGATTTGACGTAGCTAGCATGATGTCTGTTACACTC
AGCTGTGATCATCGGGTTGTGGATGGAGCAGTTGGAGCCCAGTGGCTTGCTGAGTTTAGA
AAGTACCTTGAAAAACCAATCACCATGTTGTTATAATTAACCCAAGAATTTCTAGACACT
CCCAGGTCACACTGGTTCATTCTTATGAAGATATAAATATGTTATTAAACACATGGTTGT
TTTTATTTTAAAATTAACCAGTTATCGTTGAGTCTGTCCAGATAAGTTATTTGTGATGGG
CATTACTGAATTTTTTAAAATGCCAATTATATCCAAATATTGTGCACATTTAATAAATGT
AAGATTTTAATCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCAGATATACCAGCATTTGCTGACTATCGGCCAACTGAAGTAACTGATTTAAAACCA
CCAGCACCACCACCTACCCCGTCCCCGGTGACCCCTGTTCCTCCAGCTCCCCAACCTGTA
GCCCCTACACCTGCAGCCACCCGCCCAGCTACTCCTGCTGGACCAAAGGGAAGGTTGTTT
GTTAGCCCTCTTGCAAAGAAATTGGCATCAGAGAAAGGCATTGACCTTACACAAATAAAA
GGGACAGGACCAGATGGCAGAATCATCAAGAAGGACATTGACTCCTTTGTGCCTACTAAA
GCTGCTCCTACTCCAGCAGCTGCTGTTCCTCCCCCGAGCCCAGGAGTGGCACCAGTTCCC
ACAGGGGTCTTCACAGATATCCCAATCAGCAACATTCGTCGAGTTATTGCACAGCGGTTA
ATGCAATCTAAGCAAACCATACCTCATTATTACCTTTCTGTTGATGTAAATATGGGAGAA
GTTTTGTTGGTACGGAAAGAACTTAATAAGATGTTAGAAGGGAGAAGCAAAATTTCTGTC
AATGATTTCATTATAAAAGCTTCAGCCTTGGCATGTTTAAAAGTTCCTGAAGCAAATTCT
TCTTGGCTGGACACAGTTATAAGACAAAATCATGTTGTTGATATCAGTGTCGCAGTCAGC
ACTCCTGCAGGACTCATCACACCTATTGTATTTAATGCACATATAAAAGGACTGGAAACC
ATTGCTAATGATGTTGTTTCTTTAGCAACCAAAGCACGAGAGGGTAAACTACAGCCACAT
GAGTTCCAGGGTGGCACTTTTACAATCTCGAATTTAGGAATGTTTGGAATTAAGAACTTC
TCTGCTATTATTAACCCTCCTCAAGCATGTATTTTGGCAGTTGGTGCTTCAGAGGATAGA
CTGTTTCCAGCGGATAATGAAAAAGGATTTGACGTAGCTAGCATGATGTCTGTTACACTC
AGCTGTGATCATCGGGTTGTGGATGGAGCAGTTGGAGCCCAGTGGCTTGCTGAGTTTAGA
AAGTACCTTGAAAAACCAATCACCATGTTGTTATAATTAACCCAAGAATTTCTAGACACT
CCCAGGTCACACTGGTTCATTCTTATGAAGATATAAATATGTTATTAAACACATGGTTGT
TTTTATTTTAAAATTAACCAGTTATCGTTGAGTCTGTCCAGATAAGTTATTTGTGATGGG
CATTACTGAATTTTTTAAAATGCCAATTATATCCAAATATTGTGCACATTTAATAAATGT
AAGATTTTAATCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q01991_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q01991_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               100-1270, gnl|bosTau2|chr10 (45176601-45177756)
               

               
               100-1270, gnl|Hg17|chr11 (111413365-111438686)
               

               
               100-1270, gnl|Mm7|chr9 (50629362-50614811)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-1270, gnl|bosTau2|chr10 (45176601-45177756)
               

               
               100-1270, gnl|Hg17|chr11 (111413365-111438686)
               

               
               100-1270, gnl|Mm7|chr9 (50629362-50614811)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               mas (0.42061)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               fhi (0.339155)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               eep (0.122564)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.42061)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               fhi (0.339155)
               

               
               bfe (0.299715)
               

               
               cte (0.29274)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               sto (0.179824)
               

               
               fbs (0.175346)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               eep (0.122564)

	100-1270, gnl\|bosTau2\|chr10 (45176601-45177756)
	100-1270, gnl\|Hg17\|chr11 (111413365-111438686)
	100-1270, gnl\|Mm7\|chr9 (50629362-50614811)

	mas (0.42061)
	hea (0.408998)
	che (0.408942)
	fhi (0.339155)
	bfe (0.299715)
	cte (0.29274)
	cbe (0.239234)
	ece (0.229305)
	spc (0.226732)
	nms (0.213858)
	tes (0.207814)
	sto (0.179824)
	fbs (0.175346)
	tbr (0.154178)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	ste (0.135208)
	lyg (0.133103)
	eep (0.122564)