Non-Coding RNA Search

Ss1.1-Pig4-TMW8042I12.5

Sequence:


               
               TGGCTTAACCATGGGTCCTGATGGTTTCCCGTTTTCATGGTAACAAATTCATACACAGGA
TTTGCTTCATACTGTAGAATACTGACTTTCATGATGACAACCTGGTTTATGCATGAATAT
TGCAGTATTTCCATATAGTAAAATAACATTTCTACCCAGGATAATAGTCACTGTTTTCCA
GGGAGGGAATGATAATTTTCATGACAATGTCATGTGATGATAGAATTTCTCCATTGATGA
ATCTCTAGTATGTGTGTATACTTTATTTACCCACACATATGTTTTATGACCATGAGCTAA
GTTGTTATTTCTTTAATTCATGTCCCTGCTGAAATATTGGTACTAGCAATTTAGACATGA
AGTTCCATAATGTTGATGCCACAAGAGTGGCCAGGCCAGATAGGAGACGAATAAGGAGCT
GCAGCAGAAGCCTCATTCCAGAACCTGTCTGGCTCTAGGAAAGGCAGCATTCTGCACACT
CACCCTGCAGCCTGGCGTGCACTCAGCTGCAGGCAGCAGGCCAGGCGTGGCTAGTCCTGG
CCCTGGAGTGCACACCTAGCTGTGCCCCCAGGCCCTGTGGCAGCCTGAGCCCACATAGGG
TTTCCTTCTTTAGGGTGCCGCCCCTTGGTTTTAGGGAATCTCCTGGGGCCTCATGTGCTT
AAGTTTCCAACACAGAATAGGACTGCCCCCAGCCTGCACGCCTCTACAGTTGCGAGTGGA
GTGGTGCTAGAAGACTGCCCGTCTTTGCCAGCGTTCAGCTTCTGCCCATGGACCCGTGAA
GCATTGAGGATCCCTTTTCAGCAGCCTCACACACATTCCTGTCCCTTGAGGTTGTTCTCA
ACTGTGCCTCGTCGTCACTCCACACAAGTAACAGCCAACCTCCTTAGAATTGCTCTCTGT
GTTTCCCAGCACTAGAACACGCTTCCCAGTAAGTGGGGCGTCTTACTGACAGTCAAGTTA
CCTTTTTTGTTCGTTCGTAACAACCTCTGTTTAACATGTTAATAGATTTCTGACTGTTCT
TAAAACAGTGGGGATACCTATATTTTCCTTAAGGTTTTGTGACCTACGGGCTATATACCT
TTCTGGGATTTTGTTTGTTATTTTTATTTTGCATACCGAGGGTATTGGGGTGGGGTTGTT
TTTTGAGATGTGTAATTCTTTTATGGAGTTTTTAAAAAGACTTTTCATATTGTTTTTCTA
ACATGGCTTCATTAAACGTTTAAGTATTTTAAAAATATGTAATATTTGGACCAGATGTTG
TGAATAATAGTAGAGATAAAGCTATTTTATTCTGTATTTTTAAAACTGTTCCGTACAAAT
AAAAGCTCTTCTGGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTTAACCATGGGTCCTGATGGTTTCCCGTTTTCATGGTAACAAATTCATACACAGGA
TTTGCTTCATACTGTAGAATACTGACTTTCATGATGACAACCTGGTTTATGCATGAATAT
TGCAGTATTTCCATATAGTAAAATAACATTTCTACCCAGGATAATAGTCACTGTTTTCCA
GGGAGGGAATGATAATTTTCATGACAATGTCATGTGATGATAGAATTTCTCCATTGATGA
ATCTCTAGTATGTGTGTATACTTTATTTACCCACACATATGTTTTATGACCATGAGCTAA
GTTGTTATTTCTTTAATTCATGTCCCTGCTGAAATATTGGTACTAGCAATTTAGACATGA
AGTTCCATAATGTTGATGCCACAAGAGTGGCCAGGCCAGATAGGAGACGAATAAGGAGCT
GCAGCAGAAGCCTCATTCCAGAACCTGTCTGGCTCTAGGAAAGGCAGCATTCTGCACACT
CACCCTGCAGCCTGGCGTGCACTCAGCTGCAGGCAGCAGGCCAGGCGTGGCTAGTCCTGG
CCCTGGAGTGCACACCTAGCTGTGCCCCCAGGCCCTGTGGCAGCCTGAGCCCACATAGGG
TTTCCTTCTTTAGGGTGCCGCCCCTTGGTTTTAGGGAATCTCCTGGGGCCTCATGTGCTT
AAGTTTCCAACACAGAATAGGACTGCCCCCAGCCTGCACGCCTCTACAGTTGCGAGTGGA
GTGGTGCTAGAAGACTGCCCGTCTTTGCCAGCGTTCAGCTTCTGCCCATGGACCCGTGAA
GCATTGAGGATCCCTTTTCAGCAGCCTCACACACATTCCTGTCCCTTGAGGTTGTTCTCA
ACTGTGCCTCGTCGTCACTCCACACAAGTAACAGCCAACCTCCTTAGAATTGCTCTCTGT
GTTTCCCAGCACTAGAACACGCTTCCCAGTAAGTGGGGCGTCTTACTGACAGTCAAGTTA
CCTTTTTTGTTCGTTCGTAACAACCTCTGTTTAACATGTTAATAGATTTCTGACTGTTCT
TAAAACAGTGGGGATACCTATATTTTCCTTAAGGTTTTGTGACCTACGGGCTATATACCT
TTCTGGGATTTTGTTTGTTATTTTTATTTTGCATACCGAGGGTATTGGGGTGGGGTTGTT
TTTTGAGATGTGTAATTCTTTTATGGAGTTTTTAAAAAGACTTTTCATATTGTTTTTCTA
ACATGGCTTCATTAAACGTTTAAGTATTTTAAAAATATGTAATATTTGGACCAGATGTTG
TGAATAATAGTAGAGATAAAGCTATTTTATTCTGTATTTTTAAAACTGTTCCGTACAAAT
AAAAGCTCTTCTGGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               90-206, - strand, RNAz p=0.745642
               

               
               503-604, - strand, RNAz p=0.900145

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-206, - strand, RNAz p=0.745642
               

               
               503-604, - strand, RNAz p=0.900145

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               10-657, gnl|bosTau2|chr13 (30718412-30719079)
               

               
               10-657, gnl|Hg17|chr20 (4782440-4781726)
               

               
               10-657, gnl|Mm7|chr2 (131794693-131794031)
               


               
               1183-1342, gnl|bosTau2|chr11 (80587556-80587400)
               

               
               1183-1342, gnl|Hg17|chr20 (4781160-4781004)
               

               
               1183-1342, gnl|Mm7|chr2 (131793498-131793349)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-657, gnl|bosTau2|chr13 (30718412-30719079)
               

               
               10-657, gnl|Hg17|chr20 (4782440-4781726)
               

               
               10-657, gnl|Mm7|chr2 (131794693-131794031)
               


               
               1183-1342, gnl|bosTau2|chr11 (80587556-80587400)
               

               
               1183-1342, gnl|Hg17|chr20 (4781160-4781004)
               

               
               1183-1342, gnl|Mm7|chr2 (131793498-131793349)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               sug (0.509165)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.509165)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               fat (0.147427)
               

               
               ste (0.135208)
               

               
               cov (0.132153)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	90-206, - strand, RNAz p=0.745642
	503-604, - strand, RNAz p=0.900145

	10-657, gnl\|bosTau2\|chr13 (30718412-30719079)
	10-657, gnl\|Hg17\|chr20 (4782440-4781726)
	10-657, gnl\|Mm7\|chr2 (131794693-131794031)

	1183-1342, gnl\|bosTau2\|chr11 (80587556-80587400)
	1183-1342, gnl\|Hg17\|chr20 (4781160-4781004)
	1183-1342, gnl\|Mm7\|chr2 (131793498-131793349)

	sug (0.509165)
	fce (0.271592)
	bla (0.248694)
	col (0.195008)
	fbs (0.175346)
	fhi (0.169578)
	cki (0.165235)
	cje (0.165235)
	fat (0.147427)
	ste (0.135208)
	cov (0.132153)
	pgl (0.118483)
	spc (0.113366)