Non-Coding RNA Search

Ss1.1-Pig4-TMW8042J02.3

Sequence:


               
               ACCACAGTCTTCTAGATGGGTGACCGACGGCTTTATTTAGCTGATGCATGCTTTAACATT
TGCCTATAGCCCAACATCAAGGAAGTTTGTGAGAAACTTTTCTCTTGCTAGTTACAACAT
TATGATTCTTTTGGGGCACTGGCATTTTGTGAAACCCTTGGGGGAGGGAGGGTGATGCTG
GGGAAGAAATGTGAATTAAACTGTGTGGGTGGGTGTTTCCATGTCTTCTACCCTCTCCTA
GAACCAGTACAACTTTCTTACCTGTGCCAGGCCCTAGTTCACCAGCTTTGTATCCAGTTA
TCATCTCATTCGAGTTTGGCTTTACTTGGTAACAGTGGCCACAGCTAAGTTATTTGGCAT
GTTTGACTTTCAACAGTAACAGAAATGGTTTTGGATTTTGTTTTATTTACTAAAAATGTA
TACAATGTCAGAACTTCACATTTTATATACTAGTATCTGGCTATTAGTATTTTACAGAGG
AACCATAGTTCTTGGTGACAACATATATATATATATTTTTGTGACTTTTTTGTATACTAA
GTGCCGTTTCAATGTTACAATCATTTTTAGAGTTATTGTAATCAATGTGAATATCATGTT
TTTTCAAATCTGTTCTGAGCCTATAGTGTTTGCTTTGTGAATATATGTGTATTGTATATA
TTCTGTATAGTTACATTGTACTGAAATATTAGCTTGTTTGATATAAGGAAAGTATGTATT
GAGTACTTTTTTGCTAGCCTGGTTGTTTAATCTTTTTTTTAAAAGGTTTCAACTTTTTAA
AAAACAAAAACAAAAACTTTAAACTGGCCTTTATTACATGGTCACAAATTAAAGTTGCAG
TTAGAAGGGATGGGCCGGGAAAAAATAGTTTTGAGTGTCTTTGGATAGAAACATAAGAAT
AAGATTTGTTTGGGTTTTTTTCCTTCATTAAAATATCTTATTAATGATAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCACAGTCTTCTAGATGGGTGACCGACGGCTTTATTTAGCTGATGCATGCTTTAACATT
TGCCTATAGCCCAACATCAAGGAAGTTTGTGAGAAACTTTTCTCTTGCTAGTTACAACAT
TATGATTCTTTTGGGGCACTGGCATTTTGTGAAACCCTTGGGGGAGGGAGGGTGATGCTG
GGGAAGAAATGTGAATTAAACTGTGTGGGTGGGTGTTTCCATGTCTTCTACCCTCTCCTA
GAACCAGTACAACTTTCTTACCTGTGCCAGGCCCTAGTTCACCAGCTTTGTATCCAGTTA
TCATCTCATTCGAGTTTGGCTTTACTTGGTAACAGTGGCCACAGCTAAGTTATTTGGCAT
GTTTGACTTTCAACAGTAACAGAAATGGTTTTGGATTTTGTTTTATTTACTAAAAATGTA
TACAATGTCAGAACTTCACATTTTATATACTAGTATCTGGCTATTAGTATTTTACAGAGG
AACCATAGTTCTTGGTGACAACATATATATATATATTTTTGTGACTTTTTTGTATACTAA
GTGCCGTTTCAATGTTACAATCATTTTTAGAGTTATTGTAATCAATGTGAATATCATGTT
TTTTCAAATCTGTTCTGAGCCTATAGTGTTTGCTTTGTGAATATATGTGTATTGTATATA
TTCTGTATAGTTACATTGTACTGAAATATTAGCTTGTTTGATATAAGGAAAGTATGTATT
GAGTACTTTTTTGCTAGCCTGGTTGTTTAATCTTTTTTTTAAAAGGTTTCAACTTTTTAA
AAAACAAAAACAAAAACTTTAAACTGGCCTTTATTACATGGTCACAAATTAAAGTTGCAG
TTAGAAGGGATGGGCCGGGAAAAAATAGTTTTGAGTGTCTTTGGATAGAAACATAAGAAT
AAGATTTGTTTGGGTTTTTTTCCTTCATTAAAATATCTTATTAATGATAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-448, gnl|bosTau2|chr18 (10876468-10876900)
               

               
               1-448, gnl|Hg17|chr11 (129602730-129602291)
               

               
               1-448, gnl|Mm7|chr9 (30974504-30974930)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-448, gnl|bosTau2|chr18 (10876468-10876900)
               

               
               1-448, gnl|Hg17|chr11 (129602730-129602291)
               

               
               1-448, gnl|Mm7|chr9 (30974504-30974930)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               tra (0.492368)
               

               
               bfe (0.449573)
               

               
               isp (0.300752)
               

               
               thg (0.253582)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.492368)
               

               
               bfe (0.449573)
               

               
               isp (0.300752)
               

               
               thg (0.253582)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	1-448, gnl\|bosTau2\|chr18 (10876468-10876900)
	1-448, gnl\|Hg17\|chr11 (129602730-129602291)
	1-448, gnl\|Mm7\|chr9 (30974504-30974930)

	tra (0.492368)
	bfe (0.449573)
	isp (0.300752)
	thg (0.253582)
	pan (0.23596)
	hea (0.204499)
	mga (0.160205)
	tbr (0.154178)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	ste (0.135208)
	ret (0.128733)
	cbl (0.114797)
	ldo (0.0970026)