Non-Coding RNA Search

Ss1.1-Pig4-TMW8042K19.5

Sequence:


               
               GGCCGCTGGCAACTTCCCCTGATTCAGGTACCAAGAGGATTTCGGTGAAGACATTTACTT
CTGCCTCAAATACTCAGGCCACACCGGATCTGTTAAAAGGTCAGCAAGAGCTCACTCAGC
AAACCAATGAGGAGACGGCCAAGCAGATACTTTACAATTACCTCAAAGAAGGAAGCACCG
ATAATGATGATGCTACTAAGAGGAAGGTCAACTTGGTCTTTGAGAAAATCCAGACTTTGA
AGTCTCGAGCAGCAGGGAGTACACAAGGAAATAATCAAGCTTCTAATTCTTCATCTGAAG
TCAAAGATCTCTTAGAACAGAAAAATAAGTTGACCTCAGAAGTGGCTGAACTTCAGAGAC
AGCTTCAACTAGAAGTCAAGAATCAACAGAACATCAGAGAAGAGAGAGAGAGAATGAAAG
CAAACTTAGAAGCGCTCCAAAGCCAACACAAAGGCAAGGTGGAAGAGAATGCCGAGCTGC
AGCGACGGCTGGAGGAAAGTGAAGGCGAGCTCCGGAGACAGCTGGAGGAGCTCTTCCAGG
TGAAGATGGAACGGGAACAGCACCAGACTGAGATCCGGGATCTCCAGGACCAGCTCTCAG
AAATGCATGATGAATTGGACAGTGCTAAACGATCTGAGGACAGAGAGAAGGGGGCTCTGA
TTGAAGAGCTGTTACAGGCAAAGCAGGACCTGCAGGATCTGCTCATTGCCAAGGAGGAGC
AGGAAGACCTCTTGAGAAAGCGGGAGCGTGAACTCACCGCCTTGAAGGGGGCCCTGAAGG
AAGAAGTTTCCAGCCACGACCTGGAGATGGACAAGCTGAAGGAGCAGTATGACGCCGAGC
TGCAAGCCCTGCGGGAGAGCGTGGAGGAGGCCACCAAGAACGTTGAGGTCCTGGCCAGTC
GGAGCAGTACCGCTGAGCAAACCCAGGTGGGGGCCGAGATGCATGTGAAGGCTCTGCAGG
AGGAGAACCAGAAGCTTCGGGCAAGCATTGAAGAGCTGGAGTGCACCGTAGCTCGGCTTC
AGAGGCAGGTAGCTGACCTGCAAGGCGATGAGGCTAAAGCAAAGGAAATGCTCAAGAAAT
TCGAGGGAGAAAATCGGCAATTAGAGGAGGCCCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGCTGGCAACTTCCCCTGATTCAGGTACCAAGAGGATTTCGGTGAAGACATTTACTT
CTGCCTCAAATACTCAGGCCACACCGGATCTGTTAAAAGGTCAGCAAGAGCTCACTCAGC
AAACCAATGAGGAGACGGCCAAGCAGATACTTTACAATTACCTCAAAGAAGGAAGCACCG
ATAATGATGATGCTACTAAGAGGAAGGTCAACTTGGTCTTTGAGAAAATCCAGACTTTGA
AGTCTCGAGCAGCAGGGAGTACACAAGGAAATAATCAAGCTTCTAATTCTTCATCTGAAG
TCAAAGATCTCTTAGAACAGAAAAATAAGTTGACCTCAGAAGTGGCTGAACTTCAGAGAC
AGCTTCAACTAGAAGTCAAGAATCAACAGAACATCAGAGAAGAGAGAGAGAGAATGAAAG
CAAACTTAGAAGCGCTCCAAAGCCAACACAAAGGCAAGGTGGAAGAGAATGCCGAGCTGC
AGCGACGGCTGGAGGAAAGTGAAGGCGAGCTCCGGAGACAGCTGGAGGAGCTCTTCCAGG
TGAAGATGGAACGGGAACAGCACCAGACTGAGATCCGGGATCTCCAGGACCAGCTCTCAG
AAATGCATGATGAATTGGACAGTGCTAAACGATCTGAGGACAGAGAGAAGGGGGCTCTGA
TTGAAGAGCTGTTACAGGCAAAGCAGGACCTGCAGGATCTGCTCATTGCCAAGGAGGAGC
AGGAAGACCTCTTGAGAAAGCGGGAGCGTGAACTCACCGCCTTGAAGGGGGCCCTGAAGG
AAGAAGTTTCCAGCCACGACCTGGAGATGGACAAGCTGAAGGAGCAGTATGACGCCGAGC
TGCAAGCCCTGCGGGAGAGCGTGGAGGAGGCCACCAAGAACGTTGAGGTCCTGGCCAGTC
GGAGCAGTACCGCTGAGCAAACCCAGGTGGGGGCCGAGATGCATGTGAAGGCTCTGCAGG
AGGAGAACCAGAAGCTTCGGGCAAGCATTGAAGAGCTGGAGTGCACCGTAGCTCGGCTTC
AGAGGCAGGTAGCTGACCTGCAAGGCGATGAGGCTAAAGCAAAGGAAATGCTCAAGAAAT
TCGAGGGAGAAAATCGGCAATTAGAGGAGGCCCTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               666-824, + strand, RNAz p=0.911844

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               666-824, + strand, RNAz p=0.911844

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               666-907, gnl|bosTau2|chr10 (34927693-34927457)
               

               
               666-907, gnl|canFam2|chr30 (25623363-25623539)
               

               
               666-907, gnl|danRer3|chr7 (43391526-43391351)
               

               
               666-907, gnl|dasNov1|scaffold_156664 (14-196)
               

               
               666-907, gnl|echTel1|scaffold_325000 (81555-81374)
               

               
               666-907, gnl|fr1|chrUn (81504809-81504634)
               

               
               666-907, gnl|galGal2|chr10 (8141361-8141188)
               

               
               666-907, gnl|hg17|chr15 (55541160-55541337)
               

               
               666-907, gnl|Hg17|chr15 (55541170-55541398)
               

               
               666-907, gnl|loxAfr1|scaffold_3563 (37377-37200)
               

               
               666-907, gnl|mm7|chr9 (71740222-71740044)
               

               
               666-907, gnl|Mm7|chr9 (71740209-71739961)
               

               
               666-907, gnl|monDom2|scaffold_12 (35272177-35272368)
               

               
               666-907, gnl|oryCun1|scaffold_200097 (287-464)
               

               
               666-907, gnl|panTro1|chr16 (55891692-55891869)
               

               
               666-907, gnl|rheMac2|chr7 (35797253-35797430)
               

               
               666-907, gnl|rn3|chr8 (76192749-76192575)
               

               
               666-907, gnl|tetNig1|chr5 (5381055-5381232)
               

               
               666-907, gnl|xenTro1|scaffold_297 (1381069-1380894)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               666-907, gnl|bosTau2|chr10 (34927693-34927457)
               

               
               666-907, gnl|canFam2|chr30 (25623363-25623539)
               

               
               666-907, gnl|danRer3|chr7 (43391526-43391351)
               

               
               666-907, gnl|dasNov1|scaffold_156664 (14-196)
               

               
               666-907, gnl|echTel1|scaffold_325000 (81555-81374)
               

               
               666-907, gnl|fr1|chrUn (81504809-81504634)
               

               
               666-907, gnl|galGal2|chr10 (8141361-8141188)
               

               
               666-907, gnl|hg17|chr15 (55541160-55541337)
               

               
               666-907, gnl|Hg17|chr15 (55541170-55541398)
               

               
               666-907, gnl|loxAfr1|scaffold_3563 (37377-37200)
               

               
               666-907, gnl|mm7|chr9 (71740222-71740044)
               

               
               666-907, gnl|Mm7|chr9 (71740209-71739961)
               

               
               666-907, gnl|monDom2|scaffold_12 (35272177-35272368)
               

               
               666-907, gnl|oryCun1|scaffold_200097 (287-464)
               

               
               666-907, gnl|panTro1|chr16 (55891692-55891869)
               

               
               666-907, gnl|rheMac2|chr7 (35797253-35797430)
               

               
               666-907, gnl|rn3|chr8 (76192749-76192575)
               

               
               666-907, gnl|tetNig1|chr5 (5381055-5381232)
               

               
               666-907, gnl|xenTro1|scaffold_297 (1381069-1380894)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	666-907, gnl\|bosTau2\|chr10 (34927693-34927457)
	666-907, gnl\|canFam2\|chr30 (25623363-25623539)
	666-907, gnl\|danRer3\|chr7 (43391526-43391351)
	666-907, gnl\|dasNov1\|scaffold_156664 (14-196)
	666-907, gnl\|echTel1\|scaffold_325000 (81555-81374)
	666-907, gnl\|fr1\|chrUn (81504809-81504634)
	666-907, gnl\|galGal2\|chr10 (8141361-8141188)
	666-907, gnl\|hg17\|chr15 (55541160-55541337)
	666-907, gnl\|Hg17\|chr15 (55541170-55541398)
	666-907, gnl\|loxAfr1\|scaffold_3563 (37377-37200)
	666-907, gnl\|mm7\|chr9 (71740222-71740044)
	666-907, gnl\|Mm7\|chr9 (71740209-71739961)
	666-907, gnl\|monDom2\|scaffold_12 (35272177-35272368)
	666-907, gnl\|oryCun1\|scaffold_200097 (287-464)
	666-907, gnl\|panTro1\|chr16 (55891692-55891869)
	666-907, gnl\|rheMac2\|chr7 (35797253-35797430)
	666-907, gnl\|rn3\|chr8 (76192749-76192575)
	666-907, gnl\|tetNig1\|chr5 (5381055-5381232)
	666-907, gnl\|xenTro1\|scaffold_297 (1381069-1380894)