Ss1.1-Pig4-TMW8042L01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGCCAGCCTCAGCTGAGAACGTGGAGGAAGCCAAGAGCTATGCTGCCGAAATCCATGCC CAGGGAGGGACCAATATAAATGATGCGATGCTGATGGCCGTGCAGCTGCTGGAAAGAGCC AACCGGGAGGAGCTGCTGCCCGCGAGGAGCGTTACCCTCATCATCCTCCTCACCGATGGC GACCCCACTGTGGGGGAGACCAACCCCTCGAAGATCCAGAAGAACGTTCGGGAAGCCATA GACGGCCAGCACAGCCTCTTCTGCCTGGGCTTCGGCTTTGACGTCAGCTACGCCTTCCTG GAGAAGATGGCACTGGAGAATGGCGGTCTGGCCCGGCGCATCTATGAGGACTCTGACTCT GCCCTGCAGCTCGAGGACTTCTACCAGGAGGTGGCCAACCCACTGCTGAGGTTGGTGGCC TTTGAGTACCCAAGCAATGCCGTGGAGGCAGTCACGCAGGACAACTTCCGGCTGTTCTTC AAAGGCTCTGAGTTGGTGGTGGCCGGGAAGCTCCGGGACCAGAGCCCCGATGTGCTCTCC GCCAAAGTCAGGGGGCAACTGCACATGGAGAATGTCACCTTCGTAATGGAGTCCAGGGTA GCAGAGCAGGAGGCGGAGTTCCTGAGCCCCAAGTACATCTTCCACAGCTTCATGGAGAGA CTCTGGGCATACCTGACCATCCAGCAACTGTTGGCGCAAACAGTCTCTGCGTCAGATGCT GAGAAGAAGGCCCTTGAAGCCCGAGCCCTGAGCTTGTCACTCAACTACAGCTTTGTCACC CCTCTCACATCTATGGTGATCACCAAACCTGAAGGCCAAGAACAGTCTCAGGTTGCTGAG AAGCCCGTGGAAAATGGAAACCGACAGGGGAACACCCACTCAGGTCACTCTTCCTTTCAA TTTCATTCTGTGGGAGACAGAACATCCAGACTAACAGGAGGCAGCAGTGTAGACCCTGTT TTTTCTCACAGAAGAGGCTGGAAAGGACAAGGACCCCCCGGACCTCTTCAGCCTACTCGT TTTTCTCATCCGTTTTCCCGTATAACCTTGGACCGGGTGCTGCCAGAGGTGCTATCCGTT CCTGATGAAACGTCACATGACATGGATTCAAGAATCATAGGAGCCACGATACCTCCACCC CCTGCCCGCATCCAGGCTCCTTCCGTCATCTTGCCACTGCCTGGGCAGAGCGTGGACCAG CTCTGTGTGGACCTCAAGCACTCCCAGGGCCCAGTGAAGCTGCTCTCAGACCCTGGCCAA GGGGTTGAAGTGACTGGCCACTATGAGAGGGAGAAGGCCCGCTTCTCATGGATTGAAGTG ACCTTCAAGCACCCGCCACTGCAGGTTCGTGCATCCCTGGAGCACATAGTAGTGATTCGG AACCGCCAAAGCTCTGCGTACAAGTGGAAGGAAACACTCTACTCAGTGATGCCCGGCCTC AAGATAACCATGGACAAGGCGGGACTTCTGCTGCTCAGCAGCCCAAACAGAGTGACCATC GGCCTGCTGTCCTGGGATGGCCCTGGGAAGGGGCTCCGACTCCTTCTGCGGGACACTGAC CACTTCTCCAGCCAGATCAGTGGGACCTTTGGCCAGTTTTACCAGGACGTGGTCTGGGGA CCCCCAGCAGCAGCAGATGACAGCAAGCGAACAGTGACAGTCCAGGGACATGACCACTCT GCCACCAGAGAGCTCAAGCTGGATTACCAAGAGGGATCCCCGGGAAAAGAGATTTCCTGC TGGACTGTGGTGCTGTAGTTCTGATGGGAGGAGTTACACCCGCCCCCCATGCTGCCCCCT TTTTGCAGATGGCTGCCACACTGTAACCACAGGTCAGCCTGTGGGACCTGGAACATCATG GGGAGATGTATTTTCACTCATTAAAATAAAGAGAGGTGATGTGAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGCCAGCCTCAGCTGAGAACGTGGAGGAAGCCAAGAGCTATGCTGCCGAAATCCATGCC CAGGGAGGGACCAATATAAATGATGCGATGCTGATGGCCGTGCAGCTGCTGGAAAGAGCC AACCGGGAGGAGCTGCTGCCCGCGAGGAGCGTTACCCTCATCATCCTCCTCACCGATGGC GACCCCACTGTGGGGGAGACCAACCCCTCGAAGATCCAGAAGAACGTTCGGGAAGCCATA GACGGCCAGCACAGCCTCTTCTGCCTGGGCTTCGGCTTTGACGTCAGCTACGCCTTCCTG GAGAAGATGGCACTGGAGAATGGCGGTCTGGCCCGGCGCATCTATGAGGACTCTGACTCT GCCCTGCAGCTCGAGGACTTCTACCAGGAGGTGGCCAACCCACTGCTGAGGTTGGTGGCC TTTGAGTACCCAAGCAATGCCGTGGAGGCAGTCACGCAGGACAACTTCCGGCTGTTCTTC AAAGGCTCTGAGTTGGTGGTGGCCGGGAAGCTCCGGGACCAGAGCCCCGATGTGCTCTCC GCCAAAGTCAGGGGGCAACTGCACATGGAGAATGTCACCTTCGTAATGGAGTCCAGGGTA GCAGAGCAGGAGGCGGAGTTCCTGAGCCCCAAGTACATCTTCCACAGCTTCATGGAGAGA CTCTGGGCATACCTGACCATCCAGCAACTGTTGGCGCAAACAGTCTCTGCGTCAGATGCT GAGAAGAAGGCCCTTGAAGCCCGAGCCCTGAGCTTGTCACTCAACTACAGCTTTGTCACC CCTCTCACATCTATGGTGATCACCAAACCTGAAGGCCAAGAACAGTCTCAGGTTGCTGAG AAGCCCGTGGAAAATGGAAACCGACAGGGGAACACCCACTCAGGTCACTCTTCCTTTCAA TTTCATTCTGTGGGAGACAGAACATCCAGACTAACAGGAGGCAGCAGTGTAGACCCTGTT TTTTCTCACAGAAGAGGCTGGAAAGGACAAGGACCCCCCGGACCTCTTCAGCCTACTCGT TTTTCTCATCCGTTTTCCCGTATAACCTTGGACCGGGTGCTGCCAGAGGTGCTATCCGTT CCTGATGAAACGTCACATGACATGGATTCAAGAATCATAGGAGCCACGATACCTCCACCC CCTGCCCGCATCCAGGCTCCTTCCGTCATCTTGCCACTGCCTGGGCAGAGCGTGGACCAG CTCTGTGTGGACCTCAAGCACTCCCAGGGCCCAGTGAAGCTGCTCTCAGACCCTGGCCAA GGGGTTGAAGTGACTGGCCACTATGAGAGGGAGAAGGCCCGCTTCTCATGGATTGAAGTG ACCTTCAAGCACCCGCCACTGCAGGTTCGTGCATCCCTGGAGCACATAGTAGTGATTCGG AACCGCCAAAGCTCTGCGTACAAGTGGAAGGAAACACTCTACTCAGTGATGCCCGGCCTC AAGATAACCATGGACAAGGCGGGACTTCTGCTGCTCAGCAGCCCAAACAGAGTGACCATC GGCCTGCTGTCCTGGGATGGCCCTGGGAAGGGGCTCCGACTCCTTCTGCGGGACACTGAC CACTTCTCCAGCCAGATCAGTGGGACCTTTGGCCAGTTTTACCAGGACGTGGTCTGGGGA CCCCCAGCAGCAGCAGATGACAGCAAGCGAACAGTGACAGTCCAGGGACATGACCACTCT GCCACCAGAGAGCTCAAGCTGGATTACCAAGAGGGATCCCCGGGAAAAGAGATTTCCTGC TGGACTGTGGTGCTGTAGTTCTGATGGGAGGAGTTACACCCGCCCCCCATGCTGCCCCCT TTTTGCAGATGGCTGCCACACTGTAACCACAGGTCAGCCTGTGGGACCTGGAACATCATG GGGAGATGTATTTTCACTCATTAAAATAAAGAGAGGTGATGTGAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 81 entry(ies) | More info |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
| 148-372, gnl|bosTau2|chr13 (8473628-8473852) | |
| 148-372, gnl|canFam2|chr2 (31341066-31340749) | |
| 148-372, gnl|danRer3|chr4 (22915736-22916054) | |
| 148-372, gnl|dasNov1|scaffold_191617 (560-243) | |
| 148-372, gnl|echTel1|scaffold_289379 (37080-37375) | |
| 148-372, gnl|fr1|chrUn (134676552-134676869) | |
| 148-372, gnl|galGal2|chr1 (6246200-6245883) | |
| 148-372, gnl|hg17|chr10 (7661723-7662040) | |
| 148-372, gnl|Hg17|chr10 (7661953-7661729) | |
| 148-372, gnl|loxAfr1|scaffold_18806 (44226-44542) | |
| 148-372, gnl|mm7|chr2 (10178032-10177715) | |
| 148-372, gnl|Mm7|chr2 (10177800-10178024) | |
| 148-372, gnl|monDom2|scaffold_30 (4174804-4175121) | |
| 148-372, gnl|oryCun1|scaffold_127495 (9899-10216) | |
| 148-372, gnl|panTro1|chr8_random (41286275-41286592) | |
| 148-372, gnl|rheMac2|chr9 (7785506-7785823) | |
| 148-372, gnl|rn3|chrX (40158985-40158674) | |
| 148-372, gnl|tetNig1|chr19 (546808-546491) | |
| 148-372, gnl|xenTro1|scaffold_934 (247196-247509) | |
| 558-700, gnl|bosTau2|chr22 (42309295-42309437) | |
| 558-700, gnl|canFam2|chrUn (43190453-43190297) | |
| 558-700, gnl|danRer3|chrUn (126775656-126775545) | |
| 558-700, gnl|dasNov1|scaffold_124408 (2242-2080) | |
| 558-700, gnl|echTel1|scaffold_203452 (4434-4320) | |
| 558-700, gnl|fr1|chrUn (134685921-134685811) | |
| 558-700, gnl|hg17|chr3 (52830038-52830154) | |
| 558-700, gnl|Hg17|chr3 (52830190-52830048) | |
| 558-700, gnl|loxAfr1|scaffold_102 (31985-31841) | |
| 558-700, gnl|mm7|chr14 (28324961-28324834) | |
| 558-700, gnl|Mm7|chr14 (28324796-28324938) | |
| 558-700, gnl|monDom2|scaffold_5 (69989189-69989045) | |
| 558-700, gnl|oryCun1|scaffold_115248 (5072-4943) | |
| 558-700, gnl|panTro1|chr2 (54474005-54474121) | |
| 558-700, gnl|rheMac2|chr2 (83530625-83530509) | |
| 558-700, gnl|rn3|chr16 (6327685-6327558) | |
| 558-700, gnl|tetNig1|chr19 (538409-538522) | |
| 703-857, gnl|bosTau2|chr22 (42309651-42309805) | |
| 703-857, gnl|canFam2|chrUn (43190854-43190675) | |
| 703-857, gnl|danRer3|chrUn (126775895-126775775) | |
| 703-857, gnl|dasNov1|scaffold_74561 (281-103) | |
| 703-857, gnl|echTel1|scaffold_203452 (5151-4979) | |
| 703-857, gnl|fr1|chrUn (303262525-303262360) | |
| 703-857, gnl|hg17|chr3 (52829655-52829833) | |
| 703-857, gnl|Hg17|chr3 (52829840-52829686) | |
| 703-857, gnl|loxAfr1|scaffold_102 (32451-32291) | |
| 703-857, gnl|mm7|chr14 (28325363-28325186) | |
| 703-857, gnl|Mm7|chr14 (28325177-28325331) | |
| 703-857, gnl|monDom2|scaffold_5 (69989629-69989455) | |
| 703-857, gnl|oryCun1|scaffold_115248 (5381-5225) | |
| 703-857, gnl|panTro1|chr2 (54473622-54473800) | |
| 703-857, gnl|rheMac2|chr2 (83531008-83530830) | |
| 703-857, gnl|rn3|chr16 (6328062-6327885) | |
| 703-857, gnl|tetNig1|chr11 (1123685-1123527) | |
| 1131-1262, gnl|bosTau2|chr22 (42312205-42312336) | |
| 1131-1262, gnl|canFam2|chrUn (43193342-43193130) | |
| 1131-1262, gnl|dasNov1|scaffold_74561 (3034-2839) | |
| 1131-1262, gnl|echTel1|scaffold_245436 (7197-7414) | |
| 1131-1262, gnl|hg17|chr3 (52827000-52827191) | |
| 1131-1262, gnl|Hg17|chr3 (52827238-52827107) | |
| 1131-1262, gnl|loxAfr1|scaffold_102 (35353-35153) | |
| 1131-1262, gnl|mm7|chr14 (28327971-28327787) | |
| 1131-1262, gnl|Mm7|chr14 (28327738-28327869) | |
| 1131-1262, gnl|monDom2|scaffold_5 (69994086-69993918) | |
| 1131-1262, gnl|panTro1|chr2 (54470965-54471156) | |
| 1131-1262, gnl|rheMac2|chr2 (83533678-83533487) | |
| 1131-1262, gnl|rn3|chr16 (6330748-6330565) | |
| 1436-1592, gnl|bosTau2|chr22 (42314844-42315000) | |
| 1436-1592, gnl|canFam2|chrUn (43196295-43196194) | |
| 1436-1592, gnl|echTel1|scaffold_245436 (4630-4731) | |
| 1436-1592, gnl|hg17|chr3 (52823259-52823360) | |
| 1436-1592, gnl|Hg17|chr3 (52823420-52823264) | |
| 1436-1592, gnl|loxAfr1|scaffold_116514 (780-881) | |
| 1436-1592, gnl|mm7|chr14 (28330819-28330718) | |
| 1436-1592, gnl|Mm7|chr14 (28330656-28330812) | |
| 1436-1592, gnl|monDom2|scaffold_5 (69995200-69995095) | |
| 1436-1592, gnl|oryCun1|scaffold_211790 (3623-3724) | |
| 1436-1592, gnl|rheMac2|chr2 (83538210-83538109) | |
| 1436-1592, gnl|rn3|chr16 (6333841-6333740) | |
| 1685-1904, gnl|bosTau2|chr22 (42315614-42315831) | |
| 1685-1904, gnl|Hg17|chr3 (52822550-52822347) | |
| 1685-1904, gnl|Mm7|chr14 (28331403-28331617) |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 148-372, gnl|bosTau2|chr13 (8473628-8473852) | |
| 148-372, gnl|canFam2|chr2 (31341066-31340749) | |
| 148-372, gnl|danRer3|chr4 (22915736-22916054) | |
| 148-372, gnl|dasNov1|scaffold_191617 (560-243) | |
| 148-372, gnl|echTel1|scaffold_289379 (37080-37375) | |
| 148-372, gnl|fr1|chrUn (134676552-134676869) | |
| 148-372, gnl|galGal2|chr1 (6246200-6245883) | |
| 148-372, gnl|hg17|chr10 (7661723-7662040) | |
| 148-372, gnl|Hg17|chr10 (7661953-7661729) | |
| 148-372, gnl|loxAfr1|scaffold_18806 (44226-44542) | |
| 148-372, gnl|mm7|chr2 (10178032-10177715) | |
| 148-372, gnl|Mm7|chr2 (10177800-10178024) | |
| 148-372, gnl|monDom2|scaffold_30 (4174804-4175121) | |
| 148-372, gnl|oryCun1|scaffold_127495 (9899-10216) | |
| 148-372, gnl|panTro1|chr8_random (41286275-41286592) | |
| 148-372, gnl|rheMac2|chr9 (7785506-7785823) | |
| 148-372, gnl|rn3|chrX (40158985-40158674) | |
| 148-372, gnl|tetNig1|chr19 (546808-546491) | |
| 148-372, gnl|xenTro1|scaffold_934 (247196-247509) | |
| 558-700, gnl|bosTau2|chr22 (42309295-42309437) | |
| 558-700, gnl|canFam2|chrUn (43190453-43190297) | |
| 558-700, gnl|danRer3|chrUn (126775656-126775545) | |
| 558-700, gnl|dasNov1|scaffold_124408 (2242-2080) | |
| 558-700, gnl|echTel1|scaffold_203452 (4434-4320) | |
| 558-700, gnl|fr1|chrUn (134685921-134685811) | |
| 558-700, gnl|hg17|chr3 (52830038-52830154) | |
| 558-700, gnl|Hg17|chr3 (52830190-52830048) | |
| 558-700, gnl|loxAfr1|scaffold_102 (31985-31841) | |
| 558-700, gnl|mm7|chr14 (28324961-28324834) | |
| 558-700, gnl|Mm7|chr14 (28324796-28324938) | |
| 558-700, gnl|monDom2|scaffold_5 (69989189-69989045) | |
| 558-700, gnl|oryCun1|scaffold_115248 (5072-4943) | |
| 558-700, gnl|panTro1|chr2 (54474005-54474121) | |
| 558-700, gnl|rheMac2|chr2 (83530625-83530509) | |
| 558-700, gnl|rn3|chr16 (6327685-6327558) | |
| 558-700, gnl|tetNig1|chr19 (538409-538522) | |
| 703-857, gnl|bosTau2|chr22 (42309651-42309805) | |
| 703-857, gnl|canFam2|chrUn (43190854-43190675) | |
| 703-857, gnl|danRer3|chrUn (126775895-126775775) | |
| 703-857, gnl|dasNov1|scaffold_74561 (281-103) | |
| 703-857, gnl|echTel1|scaffold_203452 (5151-4979) | |
| 703-857, gnl|fr1|chrUn (303262525-303262360) | |
| 703-857, gnl|hg17|chr3 (52829655-52829833) | |
| 703-857, gnl|Hg17|chr3 (52829840-52829686) | |
| 703-857, gnl|loxAfr1|scaffold_102 (32451-32291) | |
| 703-857, gnl|mm7|chr14 (28325363-28325186) | |
| 703-857, gnl|Mm7|chr14 (28325177-28325331) | |
| 703-857, gnl|monDom2|scaffold_5 (69989629-69989455) | |
| 703-857, gnl|oryCun1|scaffold_115248 (5381-5225) | |
| 703-857, gnl|panTro1|chr2 (54473622-54473800) | |
| 703-857, gnl|rheMac2|chr2 (83531008-83530830) | |
| 703-857, gnl|rn3|chr16 (6328062-6327885) | |
| 703-857, gnl|tetNig1|chr11 (1123685-1123527) | |
| 1131-1262, gnl|bosTau2|chr22 (42312205-42312336) | |
| 1131-1262, gnl|canFam2|chrUn (43193342-43193130) | |
| 1131-1262, gnl|dasNov1|scaffold_74561 (3034-2839) | |
| 1131-1262, gnl|echTel1|scaffold_245436 (7197-7414) | |
| 1131-1262, gnl|hg17|chr3 (52827000-52827191) | |
| 1131-1262, gnl|Hg17|chr3 (52827238-52827107) | |
| 1131-1262, gnl|loxAfr1|scaffold_102 (35353-35153) | |
| 1131-1262, gnl|mm7|chr14 (28327971-28327787) | |
| 1131-1262, gnl|Mm7|chr14 (28327738-28327869) | |
| 1131-1262, gnl|monDom2|scaffold_5 (69994086-69993918) | |
| 1131-1262, gnl|panTro1|chr2 (54470965-54471156) | |
| 1131-1262, gnl|rheMac2|chr2 (83533678-83533487) | |
| 1131-1262, gnl|rn3|chr16 (6330748-6330565) | |
| 1436-1592, gnl|bosTau2|chr22 (42314844-42315000) | |
| 1436-1592, gnl|canFam2|chrUn (43196295-43196194) | |
| 1436-1592, gnl|echTel1|scaffold_245436 (4630-4731) | |
| 1436-1592, gnl|hg17|chr3 (52823259-52823360) | |
| 1436-1592, gnl|Hg17|chr3 (52823420-52823264) | |
| 1436-1592, gnl|loxAfr1|scaffold_116514 (780-881) | |
| 1436-1592, gnl|mm7|chr14 (28330819-28330718) | |
| 1436-1592, gnl|Mm7|chr14 (28330656-28330812) | |
| 1436-1592, gnl|monDom2|scaffold_5 (69995200-69995095) | |
| 1436-1592, gnl|oryCun1|scaffold_211790 (3623-3724) | |
| 1436-1592, gnl|rheMac2|chr2 (83538210-83538109) | |
| 1436-1592, gnl|rn3|chr16 (6333841-6333740) | |
| 1685-1904, gnl|bosTau2|chr22 (42315614-42315831) | |
| 1685-1904, gnl|Hg17|chr3 (52822550-52822347) | |
| 1685-1904, gnl|Mm7|chr14 (28331403-28331617) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cli (2.90342) | |
| fli (1.62305) | |
| eli (1.0627) | |
| cov (0.264306) | |
| nje (0.16592) | |
| lun (0.150489) | |
| ese (0.126502) | |
| eje (0.0988338) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (2.90342) | |
| fli (1.62305) | |
| eli (1.0627) | |
| cov (0.264306) | |
| nje (0.16592) | |
| lun (0.150489) | |
| ese (0.126502) | |
| eje (0.0988338) |