Non-Coding RNA Search

Ss1.1-Pig4-TMW8042L15.3

Sequence:


               
               GAGAATTCTGGCAAGGATAAAAATTACTAGTGATTTAAAATTCACTTTTAGCTGACCACC
AGAACATCACCTAAAATGGTTTCAGTGACTTTAGAAAAATACCTTGAAGGTTTATGATTG
CATCAATTGAGCCTTTACCTGGTACCTACACATCTGCTCTTACATTCTGCTTTACCCTTA
GGGATTACCTTCTAAGGTTTGGTCACACCAGCAAACTGAAACAGATCTTAATGTAAATAA
AGAATTTATACTGACATTACTCATCTGTATAACAGTATTTTAGAAATTTCTGCCTTGTAT
GTCCACTAGTAGCAATATGGTGTTTAAAGTGTTATCCAGTCTTTTATGGGTGTGATTAGT
TACACAAATGTTTGTGCTTCTGTTTATACGACGAGTATCAAGCTTTATTTGTACAAGATA
GTTAACTTGCTTATTTCTGGTTCTGAAAAATAAGCTAACCTCAGTTCTGTATCCAGTGCT
TATTACCTTTAGTTGATTTTTTTTTCTTTCACCCTCCAAATACTTGTCATTCACACATTA
CCCATTTTTATTAGTGGCAAAATCATTTGTTAAAATCTAATTGTAAGGAAGGCTCAGTTT
CTGTTATCCTGAAATAATTGTATCGTAAAGGATAGTTATTCCCAAGGAACTAGCCTTGCT
TTTCCTAAGTGTCTCTGTATTCTAAAACTTCTACTATGTTTATAGAATTTAGAAAAGATC
TTACATTATTCAGAATGGCAAGACTTAACCTAAGACGTTTGTTTTCTTGGTAGTTTTTAC
GTTTAACAGTAGTGATTAAATCTATATTTTGTGATTGTTTCCTGGTGTTTTGAAATTCCT
TCCCTTTTCCTTAATTTCATTGGTGAAGATATGTTGAGATGTTGAATTTGTTTAGACACT
GATTTTGTTAAAGGCACAATTAATCACATTGGTTGTACTTTCAAGACAGAATTTAACAAA
TAAACAGAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAATTCTGGCAAGGATAAAAATTACTAGTGATTTAAAATTCACTTTTAGCTGACCACC
AGAACATCACCTAAAATGGTTTCAGTGACTTTAGAAAAATACCTTGAAGGTTTATGATTG
CATCAATTGAGCCTTTACCTGGTACCTACACATCTGCTCTTACATTCTGCTTTACCCTTA
GGGATTACCTTCTAAGGTTTGGTCACACCAGCAAACTGAAACAGATCTTAATGTAAATAA
AGAATTTATACTGACATTACTCATCTGTATAACAGTATTTTAGAAATTTCTGCCTTGTAT
GTCCACTAGTAGCAATATGGTGTTTAAAGTGTTATCCAGTCTTTTATGGGTGTGATTAGT
TACACAAATGTTTGTGCTTCTGTTTATACGACGAGTATCAAGCTTTATTTGTACAAGATA
GTTAACTTGCTTATTTCTGGTTCTGAAAAATAAGCTAACCTCAGTTCTGTATCCAGTGCT
TATTACCTTTAGTTGATTTTTTTTTCTTTCACCCTCCAAATACTTGTCATTCACACATTA
CCCATTTTTATTAGTGGCAAAATCATTTGTTAAAATCTAATTGTAAGGAAGGCTCAGTTT
CTGTTATCCTGAAATAATTGTATCGTAAAGGATAGTTATTCCCAAGGAACTAGCCTTGCT
TTTCCTAAGTGTCTCTGTATTCTAAAACTTCTACTATGTTTATAGAATTTAGAAAAGATC
TTACATTATTCAGAATGGCAAGACTTAACCTAAGACGTTTGTTTTCTTGGTAGTTTTTAC
GTTTAACAGTAGTGATTAAATCTATATTTTGTGATTGTTTCCTGGTGTTTTGAAATTCCT
TCCCTTTTCCTTAATTTCATTGGTGAAGATATGTTGAGATGTTGAATTTGTTTAGACACT
GATTTTGTTAAAGGCACAATTAATCACATTGGTTGTACTTTCAAGACAGAATTTAACAAA
TAAACAGAATTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-971, gnl|bosTau2|chr20 (3423502-3422529)
               

               
               1-971, gnl|Hg17|chr5 (74110098-74109163)
               

               
               1-971, gnl|Mm7|chr13 (94199964-94200843)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-971, gnl|bosTau2|chr20 (3423502-3422529)
               

               
               1-971, gnl|Hg17|chr5 (74110098-74109163)
               

               
               1-971, gnl|Mm7|chr13 (94199964-94200843)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ret (0.257467)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)

	1-971, gnl\|bosTau2\|chr20 (3423502-3422529)
	1-971, gnl\|Hg17\|chr5 (74110098-74109163)
	1-971, gnl\|Mm7\|chr13 (94199964-94200843)