Non-Coding RNA Search

Ss1.1-Pig4-TMW8042L20.5

Sequence:


               
               TCTCGGCCGAGAGAGCAGAGCCGGGCTGCCTGGTTAGGTACGGGCAGCCGCAGGCGCGCC
GCCGAACACGTCCGCTGAGTGCCACCACCACCGCCCGGCGCCCCGTGACCCGTGACTCCA
GACCCCGACCCCTTTTAGATCGGCCCGCGCGCCCCAGGCCCGGCCCGGGCGGCGCGACGG
GAGGATGAGCGGCGGGCGGCGGAAGGAGGAGCCGCCTCAGCCGCAGCTGGCCAACGGGGC
CCTCAAAGTCTCTGTCTGGAGCAAAGTGCTGCGGAGCGACGCGGCCTGGGAGGACAAGGA
TGAATTTTTAGATGTGATCTACTGGTTCCGACAGATCATTGCTGTGGTCCTAGGTGTCAT
TTGGGGAGTGCTACCCTTGCGAGGTTTCTTGGGAATAGCAGGATTCTGCCTGATCAATGC
AGGTGTCCTGTACCTCTACTTCAGCAACTACCTACAGATAGATGAGGAAGAATATGGTGG
CACATGGGAGCTCACGAAAGAAGGGTTTATGACGTCATTTGCCTTGTTCATGGTCATTTG
GATCATCTTTTACACTGCCATCCACTATGACTGACGGTACAGCCCCCACCTGCTCCCTGT
CTGGTCCGAAAGACCCTCTTAGTTACAGCACAGAAACATGATTGTTAGGGGCACCCCAGC
CACGTGGAACCTGGAAGACTCATGTTTCCTGGACTGAGAAATCAGTGTGTTGGGCGTCAG
TGTTTTCTGCAGGGGTTGTGACCTGAAACTTTTTAAAGAAACATCCACCTTTTGGAGAAG
CATTTCTGAATTGTCCATCACCAACCGTTTCTTCTTGGATACCATCATGAAACACCTATT
TGCCGATTGGAGCTGTCCTTTAATTTGATGCATCTCTGGATCTGGATGAAACATTAAATT
GTCTTTCTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCGGCCGAGAGAGCAGAGCCGGGCTGCCTGGTTAGGTACGGGCAGCCGCAGGCGCGCC
GCCGAACACGTCCGCTGAGTGCCACCACCACCGCCCGGCGCCCCGTGACCCGTGACTCCA
GACCCCGACCCCTTTTAGATCGGCCCGCGCGCCCCAGGCCCGGCCCGGGCGGCGCGACGG
GAGGATGAGCGGCGGGCGGCGGAAGGAGGAGCCGCCTCAGCCGCAGCTGGCCAACGGGGC
CCTCAAAGTCTCTGTCTGGAGCAAAGTGCTGCGGAGCGACGCGGCCTGGGAGGACAAGGA
TGAATTTTTAGATGTGATCTACTGGTTCCGACAGATCATTGCTGTGGTCCTAGGTGTCAT
TTGGGGAGTGCTACCCTTGCGAGGTTTCTTGGGAATAGCAGGATTCTGCCTGATCAATGC
AGGTGTCCTGTACCTCTACTTCAGCAACTACCTACAGATAGATGAGGAAGAATATGGTGG
CACATGGGAGCTCACGAAAGAAGGGTTTATGACGTCATTTGCCTTGTTCATGGTCATTTG
GATCATCTTTTACACTGCCATCCACTATGACTGACGGTACAGCCCCCACCTGCTCCCTGT
CTGGTCCGAAAGACCCTCTTAGTTACAGCACAGAAACATGATTGTTAGGGGCACCCCAGC
CACGTGGAACCTGGAAGACTCATGTTTCCTGGACTGAGAAATCAGTGTGTTGGGCGTCAG
TGTTTTCTGCAGGGGTTGTGACCTGAAACTTTTTAAAGAAACATCCACCTTTTGGAGAAG
CATTTCTGAATTGTCCATCACCAACCGTTTCTTCTTGGATACCATCATGAAACACCTATT
TGCCGATTGGAGCTGTCCTTTAATTTGATGCATCTCTGGATCTGGATGAAACATTAAATT
GTCTTTCTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5FVK9_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5FVK9_RAT

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-299, gnl|bosTau2|chr13 (44738245-44738554)
               

               
               1-299, gnl|Hg17|chr20 (34667592-34667883)
               

               
               1-299, gnl|Mm7|chr2 (156604014-156604308)
               


               
               532-914, gnl|bosTau2|chr13 (44745136-44745518)
               

               
               532-914, gnl|Hg17|chr20 (34673826-34674214)
               

               
               532-914, gnl|Mm7|chr2 (156613932-156614304)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-299, gnl|bosTau2|chr13 (44738245-44738554)
               

               
               1-299, gnl|Hg17|chr20 (34667592-34667883)
               

               
               1-299, gnl|Mm7|chr2 (156604014-156604308)
               


               
               532-914, gnl|bosTau2|chr13 (44745136-44745518)
               

               
               532-914, gnl|Hg17|chr20 (34673826-34674214)
               

               
               532-914, gnl|Mm7|chr2 (156613932-156614304)

Expressed library(ies): 46 entry(ies)

More info

Expressed library(ies): 46 entry(ies)

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               duo (0.518403)
               

               
               ldo (0.485013)
               

               
               ece (0.45861)
               

               
               jej (0.395687)
               

               
               kid (0.389206)
               

               
               nlu (0.383362)
               

               
               bla (0.373042)
               

               
               ill (0.351185)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               eli (0.303628)
               

               
               cag (0.302389)
               

               
               lun (0.300978)
               

               
               eje (0.296501)
               

               
               lnt (0.284616)
               

               
               che (0.272628)
               

               
               ute (0.265569)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               eep (0.245128)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.518403)
               

               
               ldo (0.485013)
               

               
               ece (0.45861)
               

               
               jej (0.395687)
               

               
               kid (0.389206)
               

               
               nlu (0.383362)
               

               
               bla (0.373042)
               

               
               ill (0.351185)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               eli (0.303628)
               

               
               cag (0.302389)
               

               
               lun (0.300978)
               

               
               eje (0.296501)
               

               
               lnt (0.284616)
               

               
               che (0.272628)
               

               
               ute (0.265569)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               eep (0.245128)
               

               
               clu (0.239292)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               cbl (0.229595)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	1-299, gnl\|bosTau2\|chr13 (44738245-44738554)
	1-299, gnl\|Hg17\|chr20 (34667592-34667883)
	1-299, gnl\|Mm7\|chr2 (156604014-156604308)

	532-914, gnl\|bosTau2\|chr13 (44745136-44745518)
	532-914, gnl\|Hg17\|chr20 (34673826-34674214)
	532-914, gnl\|Mm7\|chr2 (156613932-156614304)

	duo (0.518403)
	ldo (0.485013)
	ece (0.45861)
	jej (0.395687)
	kid (0.389206)
	nlu (0.383362)
	bla (0.373042)
	ill (0.351185)
	nje (0.33184)
	mga (0.32041)
	eli (0.303628)
	cag (0.302389)
	lun (0.300978)
	eje (0.296501)
	lnt (0.284616)
	che (0.272628)
	ute (0.265569)
	thg (0.253582)
	tra (0.246184)
	eep (0.245128)
	clu (0.239292)
	pgl (0.236967)
	ebs (0.236602)
	cbl (0.229595)
	tes (0.207814)
	fcc (0.197785)
	gul (0.177588)
	ton (0.1755)
	cje (0.165235)
	cki (0.165235)
	nco (0.161734)
	cli (0.152812)
	lin (0.145603)
	spl (0.143184)
	pty (0.142714)
	cst (0.140036)
	nca (0.136874)
	ste (0.135208)
	pla (0.133672)
	cov (0.132153)
	ret (0.128733)
	ese (0.126502)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)