Ss1.1-Pig4-TMW8042L21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGAGAACAGATCCCCATCAGCAGGATGTGGGGGCTCAAGGTTGTACTACTGCTGCCTGT GATGAGCTCTGCTCTATACCCTGAGGAGATACTGGATACCCAGTGGGAGCTATGGAAGAA GACCTACAGGAAGCAGTATAACAGCAAGGTGGATGAAATCTCTCGGCGTTTAATTTGGGA AAAAAACCTGAAGCATATTTCCATCCATAATCTTGAGGCCTCTCTTGGGGTTCATACGTA TGAACTGGCCATGAACCACTTGGGCGATATGACCAGTGAAGAAGTGGTTCAGAAGATGAC TGGACTCAAAGTACCCCCCTCTCATTCCCGCAGTAATGACACCCTTTATATCCCAGACTG GGAAGGCAGAACCCCAGACTCTATTGATTATCGGAAGAAAGGATATGTTACTCCTGTCAA AAACCAGGGTCAGTGTGGTTCCTGTTGGGCTTTTAGCTCTGTGGGGGCCCTGGAGGGCCA ACTCAAGAAGAAAACTGGCAAACTCTTAAATCTGAGTCCCCAGAACCTGGTGGATTGTGT GTCTGAGAATGATGGCTGTGGAGGGGGCTACATGACCAATGCCTTCCAGTATGTGCAGAA GAACCGTGGCATTGACTCAGAAGATGCCTACCCATACGTGGGACAGGATGAAAATTGTAT GTACAACCCAACAGGCAAGGCAGCTAAGTGCAGAGGGTACAGAGAGATCCCTGAGGGAAA TGAAAAAGCCCTGAAGAGGGCAGTGGCCCGAGTGGGACCTGTCTCTGTGGCCATTGATGC AAGCCTGACCTCCTTCCAGTTTTACAGCAAAGGTGTGTATTACGATGAAAACTGCAATAG CGATAATCTCAACCACGCGGTCTTGGCAGTGGGATATGGGATCCAGAAGGGAAAAAAGCA CTGGATAATTAAAAACAGCTGGGGAGAAAACTGGGGCAACAAAGGCTATATCCTCATGGC TCGGAATAAGAACAACGCTTGTGGCATTGCCAACCTGGCCAGCTTCCCCAAGATGTGACT TCAGCCAGGCAACCTCATCCTGCTCTTCCATCCCTTCCATGATGGTGCAACTTACTGATG TACTTCAGAAGGGAACTGGTGTGTCTTTCCTGAAGCAGATGTAGTGATACAGAGCTGGTC CATCGGTTTCCCTCCTTGTTAGTACTTCAAGTGACACTCCTACTACTTTTCTGCTCTCCA CCCCAAGGTCTTTATTTTTTCATTGTGGCCAGACCAGAGCTTTCCCTAACAGGTATACAT TCTTAGGCTAGGAGATGTGACCACAGTCTGCCCTGTGTTGTCCTGGGCTGATGCTGTGTA AATAGAAGCTAGAGATCTTCAGATAGGCTAGATTCTCATATACAGGGACTAGATAGCTTT AACCACTCTAGAGGACTAAGGTGACCTGACTTCTCAGTCTCCACATTTACTTCTCTATCT TCAAGATAGAAATTGCCCCTCAATTAATAAATCTAGTCATAAATCTTTGGTACAAGCTTA CATATACAGCAAATGTGTTTTCTTTTTCCTTCTTTGCATTTTTAAAGTAAACTGTATTTA TCTCTTGTCTATAATTTAATAAATAGCTCTTTAATAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGAGAACAGATCCCCATCAGCAGGATGTGGGGGCTCAAGGTTGTACTACTGCTGCCTGT GATGAGCTCTGCTCTATACCCTGAGGAGATACTGGATACCCAGTGGGAGCTATGGAAGAA GACCTACAGGAAGCAGTATAACAGCAAGGTGGATGAAATCTCTCGGCGTTTAATTTGGGA AAAAAACCTGAAGCATATTTCCATCCATAATCTTGAGGCCTCTCTTGGGGTTCATACGTA TGAACTGGCCATGAACCACTTGGGCGATATGACCAGTGAAGAAGTGGTTCAGAAGATGAC TGGACTCAAAGTACCCCCCTCTCATTCCCGCAGTAATGACACCCTTTATATCCCAGACTG GGAAGGCAGAACCCCAGACTCTATTGATTATCGGAAGAAAGGATATGTTACTCCTGTCAA AAACCAGGGTCAGTGTGGTTCCTGTTGGGCTTTTAGCTCTGTGGGGGCCCTGGAGGGCCA ACTCAAGAAGAAAACTGGCAAACTCTTAAATCTGAGTCCCCAGAACCTGGTGGATTGTGT GTCTGAGAATGATGGCTGTGGAGGGGGCTACATGACCAATGCCTTCCAGTATGTGCAGAA GAACCGTGGCATTGACTCAGAAGATGCCTACCCATACGTGGGACAGGATGAAAATTGTAT GTACAACCCAACAGGCAAGGCAGCTAAGTGCAGAGGGTACAGAGAGATCCCTGAGGGAAA TGAAAAAGCCCTGAAGAGGGCAGTGGCCCGAGTGGGACCTGTCTCTGTGGCCATTGATGC AAGCCTGACCTCCTTCCAGTTTTACAGCAAAGGTGTGTATTACGATGAAAACTGCAATAG CGATAATCTCAACCACGCGGTCTTGGCAGTGGGATATGGGATCCAGAAGGGAAAAAAGCA CTGGATAATTAAAAACAGCTGGGGAGAAAACTGGGGCAACAAAGGCTATATCCTCATGGC TCGGAATAAGAACAACGCTTGTGGCATTGCCAACCTGGCCAGCTTCCCCAAGATGTGACT TCAGCCAGGCAACCTCATCCTGCTCTTCCATCCCTTCCATGATGGTGCAACTTACTGATG TACTTCAGAAGGGAACTGGTGTGTCTTTCCTGAAGCAGATGTAGTGATACAGAGCTGGTC CATCGGTTTCCCTCCTTGTTAGTACTTCAAGTGACACTCCTACTACTTTTCTGCTCTCCA CCCCAAGGTCTTTATTTTTTCATTGTGGCCAGACCAGAGCTTTCCCTAACAGGTATACAT TCTTAGGCTAGGAGATGTGACCACAGTCTGCCCTGTGTTGTCCTGGGCTGATGCTGTGTA AATAGAAGCTAGAGATCTTCAGATAGGCTAGATTCTCATATACAGGGACTAGATAGCTTT AACCACTCTAGAGGACTAAGGTGACCTGACTTCTCAGTCTCCACATTTACTTCTCTATCT TCAAGATAGAAATTGCCCCTCAATTAATAAATCTAGTCATAAATCTTTGGTACAAGCTTA CATATACAGCAAATGTGTTTTCTTTTTCCTTCTTTGCATTTTTAAAGTAAACTGTATTTA TCTCTTGTCTATAATTTAATAAATAGCTCTTTAATAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 915-1033, - strand, RNAz p=0.933534 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 915-1033, - strand, RNAz p=0.933534 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 11-180, gnl|bosTau2|chr3 (16772748-16772912) | |
| 11-180, gnl|Hg17|chr1 (147592369-147592203) | |
| 11-180, gnl|Mm7|chr3 (95374769-95374912) | |
| 425-647, gnl|bosTau2|chr3 (16775434-16775656) | |
| 425-647, gnl|canFam2|chr17 (63013865-63014086) | |
| 425-647, gnl|danRer3|chr12 (10134713-10134486) | |
| 425-647, gnl|dasNov1|scaffold_33825 (41535-41321) | |
| 425-647, gnl|echTel1|scaffold_324356 (48303-48082) | |
| 425-647, gnl|fr1|chrUn (304988244-304988021) | |
| 425-647, gnl|galGal2|chrZ_random (13966455-13966230) | |
| 425-647, gnl|hg17|chr1 (147589565-147589786) | |
| 425-647, gnl|Hg17|chr1 (147589791-147589569) | |
| 425-647, gnl|loxAfr1|scaffold_4180 (46202-45989) | |
| 425-647, gnl|mm7|chr3 (95376756-95376535) | |
| 425-647, gnl|Mm7|chr3 (95376528-95376750) | |
| 425-647, gnl|monDom2|scaffold_44 (3976155-3976376) | |
| 425-647, gnl|oryCun1|scaffold_155924 (10740-10961) | |
| 425-647, gnl|panTro1|chr1 (129321784-129322005) | |
| 425-647, gnl|rheMac2|chr1 (129207574-129207795) | |
| 425-647, gnl|rn3|chr2 (190362266-190362045) | |
| 425-647, gnl|tetNig1|chrUn_random (41089338-41089555) | |
| 425-647, gnl|xenTro1|scaffold_122 (1820839-1820618) | |
| 915-1598, gnl|bosTau2|chr3 (16783073-16783749) | |
| 915-1598, gnl|Hg17|chr1 (147582451-147581763) | |
| 915-1598, gnl|Mm7|chr3 (95382768-95383325) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-180, gnl|bosTau2|chr3 (16772748-16772912) | |
| 11-180, gnl|Hg17|chr1 (147592369-147592203) | |
| 11-180, gnl|Mm7|chr3 (95374769-95374912) | |
| 425-647, gnl|bosTau2|chr3 (16775434-16775656) | |
| 425-647, gnl|canFam2|chr17 (63013865-63014086) | |
| 425-647, gnl|danRer3|chr12 (10134713-10134486) | |
| 425-647, gnl|dasNov1|scaffold_33825 (41535-41321) | |
| 425-647, gnl|echTel1|scaffold_324356 (48303-48082) | |
| 425-647, gnl|fr1|chrUn (304988244-304988021) | |
| 425-647, gnl|galGal2|chrZ_random (13966455-13966230) | |
| 425-647, gnl|hg17|chr1 (147589565-147589786) | |
| 425-647, gnl|Hg17|chr1 (147589791-147589569) | |
| 425-647, gnl|loxAfr1|scaffold_4180 (46202-45989) | |
| 425-647, gnl|mm7|chr3 (95376756-95376535) | |
| 425-647, gnl|Mm7|chr3 (95376528-95376750) | |
| 425-647, gnl|monDom2|scaffold_44 (3976155-3976376) | |
| 425-647, gnl|oryCun1|scaffold_155924 (10740-10961) | |
| 425-647, gnl|panTro1|chr1 (129321784-129322005) | |
| 425-647, gnl|rheMac2|chr1 (129207574-129207795) | |
| 425-647, gnl|rn3|chr2 (190362266-190362045) | |
| 425-647, gnl|tetNig1|chrUn_random (41089338-41089555) | |
| 425-647, gnl|xenTro1|scaffold_122 (1820839-1820618) | |
| 915-1598, gnl|bosTau2|chr3 (16783073-16783749) | |
| 915-1598, gnl|Hg17|chr1 (147582451-147581763) | |
| 915-1598, gnl|Mm7|chr3 (95382768-95383325) |
| Expressed library(ies): 49 entry(ies) | More info |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
| ret (1.28733) | |
| nmm (1.19522) | |
| cbr (1.15178) | |
| fat (1.03199) | |
| ski (1.02715) | |
| csk (0.985222) | |
| cmu (0.931966) | |
| gul (0.887942) | |
| ova (0.774793) | |
| rec (0.692281) | |
| tra (0.61546) | |
| pro (0.512033) | |
| bla (0.497389) | |
| mga (0.480615) | |
| liv (0.438853) | |
| nca (0.410621) | |
| aor (0.390549) | |
| jca (0.34188) | |
| cte (0.29274) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| cly (0.241284) | |
| cbe (0.239234) | |
| med (0.232504) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nje (0.16592) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (1.28733) | |
| nmm (1.19522) | |
| cbr (1.15178) | |
| fat (1.03199) | |
| ski (1.02715) | |
| csk (0.985222) | |
| cmu (0.931966) | |
| gul (0.887942) | |
| ova (0.774793) | |
| rec (0.692281) | |
| tra (0.61546) | |
| pro (0.512033) | |
| bla (0.497389) | |
| mga (0.480615) | |
| liv (0.438853) | |
| nca (0.410621) | |
| aor (0.390549) | |
| jca (0.34188) | |
| cte (0.29274) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| cly (0.241284) | |
| cbe (0.239234) | |
| med (0.232504) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nje (0.16592) | |
| lin (0.145603) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| nbm (0.0993246) | |
| eje (0.0988338) |