Non-Coding RNA Search

Ss1.1-Pig4-TMW8042L22.5

Sequence:


               
               GAAATGAGCTTTGTGACTGGATTCCATGTCGTTGCTGTTCCTCAGGACCCTTGGAGATGC
TGCAAGGTCTCAGGCCCCCCCTTGTTTCTGCAGTCGATCTTTAGGGGTTTCTCCTCAGAA
TCTAGAACTGGCCTGTGAGGAGTCAGCCCAAGAGAGCTTTGGCCCGCGCTGCCTGTGTCC
ACCAGGTCTTTCTGGGAGTCCCCAGTGGGCCCCCACCCTGCCACATACCCCTGGCAACAG
GCACACCTATTTCAGGACATTTAACATTTACAATTGTTTTGGCCAACCTCCCTTCCTGGT
GGTACAGAGCCCTCTTCTGAGGCCCCAGGACCCCACGGGTTTATCCAGGCTCACCTGCTC
CGTGTCAGGGCCAAGCACACACCGCCATGCCCCGGGGGTGGGGGAGTCAGACATCTGTCT
TTGAACTGATGTGTTGACTTCTTACGAAGTGGTGTCTCCATGGATTTGAAAACTATGAAC
TATGATGTAAATTCTCTTCGAATGTGATTTGGAGGCATCAGAACAGCAGCCAGTATTTCA
GATGAATGTTAAGAACTAGTTACAAATGGATGGTCTTGGGATCTGCAAGTCTCTTCAGAA
AGATGACCTTGTTCCCACAGAGCTTGTAGTTGTCCAGCCAGATTATGTTGGGGGGAAAGA
AGGCAGTTCTGATGGTCATAGCAGGTAGGCAGCCTTCCTGGTTTCGAGGGGCTTACTGAA
TTTCTGGGGTCCTGAGTAATTCTGGAAATGTCCATCTAGCATCTCCCATCATTGCCAAGG
AGGAACGTAAGCCCCCAGTGACCCATGTGCTGTGACCCATGAAAGGTGGTGCTGCGAGAG
TCACAGGGCCCTGAGCACCCTCTGGTCTCCACTTAACCTTCATTGCTTGAATTCCCCCAC
CCACCCTTTCTCTGGCCCTTTCCCATAATGTCTTCAAACCATTTCCTTCTAACTTTTTTT
CTTTCCCTAATTGGCGACATATGGAATAAAGTATTTTGGAATTTTTGGTTATATTTATTA
AATAAAGCTTTATGATCCTTTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATGAGCTTTGTGACTGGATTCCATGTCGTTGCTGTTCCTCAGGACCCTTGGAGATGC
TGCAAGGTCTCAGGCCCCCCCTTGTTTCTGCAGTCGATCTTTAGGGGTTTCTCCTCAGAA
TCTAGAACTGGCCTGTGAGGAGTCAGCCCAAGAGAGCTTTGGCCCGCGCTGCCTGTGTCC
ACCAGGTCTTTCTGGGAGTCCCCAGTGGGCCCCCACCCTGCCACATACCCCTGGCAACAG
GCACACCTATTTCAGGACATTTAACATTTACAATTGTTTTGGCCAACCTCCCTTCCTGGT
GGTACAGAGCCCTCTTCTGAGGCCCCAGGACCCCACGGGTTTATCCAGGCTCACCTGCTC
CGTGTCAGGGCCAAGCACACACCGCCATGCCCCGGGGGTGGGGGAGTCAGACATCTGTCT
TTGAACTGATGTGTTGACTTCTTACGAAGTGGTGTCTCCATGGATTTGAAAACTATGAAC
TATGATGTAAATTCTCTTCGAATGTGATTTGGAGGCATCAGAACAGCAGCCAGTATTTCA
GATGAATGTTAAGAACTAGTTACAAATGGATGGTCTTGGGATCTGCAAGTCTCTTCAGAA
AGATGACCTTGTTCCCACAGAGCTTGTAGTTGTCCAGCCAGATTATGTTGGGGGGAAAGA
AGGCAGTTCTGATGGTCATAGCAGGTAGGCAGCCTTCCTGGTTTCGAGGGGCTTACTGAA
TTTCTGGGGTCCTGAGTAATTCTGGAAATGTCCATCTAGCATCTCCCATCATTGCCAAGG
AGGAACGTAAGCCCCCAGTGACCCATGTGCTGTGACCCATGAAAGGTGGTGCTGCGAGAG
TCACAGGGCCCTGAGCACCCTCTGGTCTCCACTTAACCTTCATTGCTTGAATTCCCCCAC
CCACCCTTTCTCTGGCCCTTTCCCATAATGTCTTCAAACCATTTCCTTCTAACTTTTTTT
CTTTCCCTAATTGGCGACATATGGAATAAAGTATTTTGGAATTTTTGGTTATATTTATTA
AATAAAGCTTTATGATCCTTTGTT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               2-393, gnl|bosTau2|chr25 (33532844-33533236)
               

               
               2-393, gnl|Hg17|chr7 (6469296-6469732)
               

               
               2-393, gnl|Mm7|chr5 (142284660-142284300)
               


               
               455-1040, gnl|bosTau2|chr25 (33533317-33533927)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-393, gnl|bosTau2|chr25 (33532844-33533236)
               

               
               2-393, gnl|Hg17|chr7 (6469296-6469732)
               

               
               2-393, gnl|Mm7|chr5 (142284660-142284300)
               


               
               455-1040, gnl|bosTau2|chr25 (33533317-33533927)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               lin (0.145603)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	2-393, gnl\|bosTau2\|chr25 (33532844-33533236)
	2-393, gnl\|Hg17\|chr7 (6469296-6469732)
	2-393, gnl\|Mm7\|chr5 (142284660-142284300)

	455-1040, gnl\|bosTau2\|chr25 (33533317-33533927)

	mcp (0.170648)
	eye (0.170503)
	lin (0.145603)
	ova (0.129132)
	ese (0.126502)
	eru (0.120048)
	ecc (0.115035)
	ldo (0.0970026)