Non-Coding RNA Search

Ss1.1-Pig4-TMW8042L24.3

Sequence:


               
               GACAAGATGCGGGCTGGTGCGGAGAGAAAGGACTCCGAGACAGACAGGTTCCCGCAGGGG
ACACTCACCCTCCTGAGGTCCGTGTTCTGGAAGAAGGAGAACAGGAAGAGCGAGAGGGCG
GAGGCGGCCCCCCCGGCGGCCCCCGGCTCCCTAGGGAGCGGCAGGCTGAGCCCCGCTGTG
GGTGAGCAGGCCCGAGGCTCCTCTCCATCGCTCAGGATCCGAGAGAGCCTGGCCAGGGGT
CCAGCGGGCCCCCTGGAAAGGGATGTCCGGTCAGCCCCCAGCTCTCTGCACCTCCCTCGC
AAGGCCGGCAGGCCCCCGCGGGCCAGTGCCCTGGGCACATCACAGAGGATTGCTCCCGGG
GAACAGACGTCTTTGGGCGCCTTGCCAAAGGTGAAGTACCACACGCTCTCCTTACGTCGG
AAGAAAACATTGCCCGAGTCCAGCCTCTGATGGTGGGTGTGTCCCGGTGATGTGTGGACC
TGGCCTATTCTCTCGACTCTGCACTGAGCACCTACCTGTGTTGGTAATGAGACTTGGGGG
AGCCAGTTGTCTTGTGACCTCTGAAAATAGTAAGAATTAAAAAAAAAAAAATTGTTTGGT
TTCTGCATCTAGATTTCCATCACCGAACTTCCAAAAATACCTACCTGTATTGTTGGCTGC
TTTTATACTTCAAGACCACCAGAGGGCGCTGGTGGGTCAGCATAATCATTTCAGGGCAAG
AAATGCTGTTTTGTTCAAACAGTTCCAGGGTTTAAGTATTTGTACTAAAGGGTGAATGGA
TGGGGGCAAAACATAGAGCGTAACTCTGTGAAGAAGGCTAATGAATAAGAATCTTCAGTA
TCAAATCAAATACTGTCATTGGCTTCCCCTATTTAATTATTATTTTTTTCAATAGTGGAC
TTAAAGGGAAAATCTTCTTTTCCTCTTCATATTTCTCTGGGACAAAGCATGAAGGATGCA
AAGAAAGGTGGTAGTGACAGTAAAGCAGGATTCTAAAAGAACTGAGATGGCAAGAGAAAT
GACAGATTTTAGGAGAGTATTTAATATGTAACACAATAATTGTATTAAACTTTTCCAAGG
TATTTAAAGAAGATAACTATTTTGATACTAAGGAAAAAGGGAAGTTTTTTTTTTAAAAAA
TGTAACTATGAGATCTATGTACAATTTTAATAAAAGCTCACTGGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAAGATGCGGGCTGGTGCGGAGAGAAAGGACTCCGAGACAGACAGGTTCCCGCAGGGG
ACACTCACCCTCCTGAGGTCCGTGTTCTGGAAGAAGGAGAACAGGAAGAGCGAGAGGGCG
GAGGCGGCCCCCCCGGCGGCCCCCGGCTCCCTAGGGAGCGGCAGGCTGAGCCCCGCTGTG
GGTGAGCAGGCCCGAGGCTCCTCTCCATCGCTCAGGATCCGAGAGAGCCTGGCCAGGGGT
CCAGCGGGCCCCCTGGAAAGGGATGTCCGGTCAGCCCCCAGCTCTCTGCACCTCCCTCGC
AAGGCCGGCAGGCCCCCGCGGGCCAGTGCCCTGGGCACATCACAGAGGATTGCTCCCGGG
GAACAGACGTCTTTGGGCGCCTTGCCAAAGGTGAAGTACCACACGCTCTCCTTACGTCGG
AAGAAAACATTGCCCGAGTCCAGCCTCTGATGGTGGGTGTGTCCCGGTGATGTGTGGACC
TGGCCTATTCTCTCGACTCTGCACTGAGCACCTACCTGTGTTGGTAATGAGACTTGGGGG
AGCCAGTTGTCTTGTGACCTCTGAAAATAGTAAGAATTAAAAAAAAAAAAATTGTTTGGT
TTCTGCATCTAGATTTCCATCACCGAACTTCCAAAAATACCTACCTGTATTGTTGGCTGC
TTTTATACTTCAAGACCACCAGAGGGCGCTGGTGGGTCAGCATAATCATTTCAGGGCAAG
AAATGCTGTTTTGTTCAAACAGTTCCAGGGTTTAAGTATTTGTACTAAAGGGTGAATGGA
TGGGGGCAAAACATAGAGCGTAACTCTGTGAAGAAGGCTAATGAATAAGAATCTTCAGTA
TCAAATCAAATACTGTCATTGGCTTCCCCTATTTAATTATTATTTTTTTCAATAGTGGAC
TTAAAGGGAAAATCTTCTTTTCCTCTTCATATTTCTCTGGGACAAAGCATGAAGGATGCA
AAGAAAGGTGGTAGTGACAGTAAAGCAGGATTCTAAAAGAACTGAGATGGCAAGAGAAAT
GACAGATTTTAGGAGAGTATTTAATATGTAACACAATAATTGTATTAAACTTTTCCAAGG
TATTTAAAGAAGATAACTATTTTGATACTAAGGAAAAAGGGAAGTTTTTTTTTTAAAAAA
TGTAACTATGAGATCTATGTACAATTTTAATAAAAGCTCACTGGTGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q922G4_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q922G4_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               157-270, + strand, RNAz p=0.643723

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-270, + strand, RNAz p=0.643723

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-775, gnl|bosTau2|chr19 (21729075-21729828)
               

               
               3-775, gnl|Hg17|chr17 (9572608-9573363)
               

               
               3-775, gnl|Mm7|chr11 (67937482-67936713)
               


               
               821-1180, gnl|bosTau2|chr19 (21729828-21730156)
               

               
               821-1180, gnl|Hg17|chr17 (9573363-9573720)
               

               
               821-1180, gnl|Mm7|chr11 (67936713-67936272)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-775, gnl|bosTau2|chr19 (21729075-21729828)
               

               
               3-775, gnl|Hg17|chr17 (9572608-9573363)
               

               
               3-775, gnl|Mm7|chr11 (67937482-67936713)
               


               
               821-1180, gnl|bosTau2|chr19 (21729828-21730156)
               

               
               821-1180, gnl|Hg17|chr17 (9573363-9573720)
               

               
               821-1180, gnl|Mm7|chr11 (67936713-67936272)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               sag (0.182715)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	3-775, gnl\|bosTau2\|chr19 (21729075-21729828)
	3-775, gnl\|Hg17\|chr17 (9572608-9573363)
	3-775, gnl\|Mm7\|chr11 (67937482-67936713)

	821-1180, gnl\|bosTau2\|chr19 (21729828-21730156)
	821-1180, gnl\|Hg17\|chr17 (9573363-9573720)
	821-1180, gnl\|Mm7\|chr11 (67936713-67936272)

	sag (0.182715)
	cst (0.140036)
	pla (0.133672)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	spc (0.113366)
	jej (0.0989218)