Non-Coding RNA Search

Ss1.1-Pig4-TMW8042M01.3

Sequence:


               
               GAGATTTTATTACATCAGTGTAAATATCACTCCTCATTTAGTCCAAAATAGTCAGCTTTG
AATTTGTGCTGAGCATTTAACAATAGTAAAAAAGCTGCTGTGTAGGTTTTAGAAAACATA
ATCTATAATCCGTAGTTCTGATTCCCTCTGTGTAGAAAAGACGTATTTAACCTTCACTGT
TCCCGTATTAAGCACGATACTGTATAGCATTAATCAGATGAATTTACTGGGATCTAATGT
TGTATTTTTATTATAGTCATGATCTTTTTAAAGGTATCAGTGCCTTCAGTTGTGCTTAGA
AAGTATGTGCCTTAAATCTTCCTCTCTAGACCCAGTGTTTTTCATTTAATAAGTTGTGTA
TGACAGCCTAGTGACTCTTTGCATTTGATTTGAGGGAAATGACTGTGATCCTGAAGGATT
CCTTCCCCTAGAACTAGGCTAATGTCTATGAAGTCTAGGGCTTCTGGAGAGGGAATCCCA
ATCATGTGTACTGACTGTCTAGAAAGTTAAAGTCATAAGGGTTAGGGCCCTGAAATAAAA
TCAATGAAAAAGTATATTCTAGTTCATATTATTTTACAAAGAAAATGTTGTATTTGCTGC
CACTAAGGGATGACAGCAGTTCCTAACTAATTCATATTAATAACATGTAAAGATATTATT
GCCATGAGGCATATCATATTTTGTAAATACTGTCTTTGTAATACCAGGTTAAAGGGGGAG
TATTTTTTAATATTTTTGCATGTAAATATCTCCATTCTTTTTCCGTTCCAACTTGGTTCA
TATTTGCTAAAAACTGACATAGAAAATAACAGTTCACGAGCAACAAACATACATTATTGA
ATACTCACAGGGTAGTATGGATTTGGGTGCTACTGGACCTTTACCTAGCACTTGTCAGTC
TCAGTTTATCATAAGGAACAGTATTTAATCTGATAAATATTAAATTTTGTTAGTATAATG
AAGGTTATTTACCATTATACTAGAAAGCCATGGTTGGAGAGACTATCTTCATTCACCAGA
AGTGACTTTCTTCCTTTGGCTATGAATAAATTGGATAAAACTATTTTATTCTAAATTCCA
GTTAGGGGAAGAAACTGGGATAAGAATGACAACACTATTGCTGGTACTATAAAAAATTAC
CAAGTTGCTTAATTTTTCTGTCTACAACTGATGTTTTAAAAGAATCCTTTCACTAACTTA
AGTGGTTGCCATTGAAGTGTTATTAAGAAGGAATATTAACCTCAGCAATCACTTTACAAC
AATCATGGAGAGACCTGTGTGCCTGCAGTTGGTGTTTGTTGCATTTCTGAGCCCACTTTG
TGTTCATCAGAAACAAAAGTATAATGGGAGAAATATTTTAAATAACCAGTATTTTAACTT
TTCATAAAGTTGGGACTTTAAAGTATCAACAAAGGATATTGAAATATATGTATTTTTACT
TTAGTCAAAACTACTTTTTATCTGATTTTTTAATTTTCTGTATTTGGAATCTTGTGAATT
AGAAATATCTATATCTACAGGTATATGGATATTTAAGACAATTGTAACAATAAATGTAAT
TCAGCAATGTGATTCAATTACATTTTATTTTCAGGATAAGATATGGTTTATTGTGTCAAA
TTTATATATTACCTTATATTGGTAAATGCTCTAAAAAGAATATTTAAGCTTCTTCAATTC
TATACCTCCTCTTTTCCCCAAGGACACACAAAAGAATGTGATCTAATATTAACCCTCTAT
GTGAATTTTGCCTTATCAAACATTGTGCCTTACTTTATTAAAAGTGTTTTGTTCAAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATTTTATTACATCAGTGTAAATATCACTCCTCATTTAGTCCAAAATAGTCAGCTTTG
AATTTGTGCTGAGCATTTAACAATAGTAAAAAAGCTGCTGTGTAGGTTTTAGAAAACATA
ATCTATAATCCGTAGTTCTGATTCCCTCTGTGTAGAAAAGACGTATTTAACCTTCACTGT
TCCCGTATTAAGCACGATACTGTATAGCATTAATCAGATGAATTTACTGGGATCTAATGT
TGTATTTTTATTATAGTCATGATCTTTTTAAAGGTATCAGTGCCTTCAGTTGTGCTTAGA
AAGTATGTGCCTTAAATCTTCCTCTCTAGACCCAGTGTTTTTCATTTAATAAGTTGTGTA
TGACAGCCTAGTGACTCTTTGCATTTGATTTGAGGGAAATGACTGTGATCCTGAAGGATT
CCTTCCCCTAGAACTAGGCTAATGTCTATGAAGTCTAGGGCTTCTGGAGAGGGAATCCCA
ATCATGTGTACTGACTGTCTAGAAAGTTAAAGTCATAAGGGTTAGGGCCCTGAAATAAAA
TCAATGAAAAAGTATATTCTAGTTCATATTATTTTACAAAGAAAATGTTGTATTTGCTGC
CACTAAGGGATGACAGCAGTTCCTAACTAATTCATATTAATAACATGTAAAGATATTATT
GCCATGAGGCATATCATATTTTGTAAATACTGTCTTTGTAATACCAGGTTAAAGGGGGAG
TATTTTTTAATATTTTTGCATGTAAATATCTCCATTCTTTTTCCGTTCCAACTTGGTTCA
TATTTGCTAAAAACTGACATAGAAAATAACAGTTCACGAGCAACAAACATACATTATTGA
ATACTCACAGGGTAGTATGGATTTGGGTGCTACTGGACCTTTACCTAGCACTTGTCAGTC
TCAGTTTATCATAAGGAACAGTATTTAATCTGATAAATATTAAATTTTGTTAGTATAATG
AAGGTTATTTACCATTATACTAGAAAGCCATGGTTGGAGAGACTATCTTCATTCACCAGA
AGTGACTTTCTTCCTTTGGCTATGAATAAATTGGATAAAACTATTTTATTCTAAATTCCA
GTTAGGGGAAGAAACTGGGATAAGAATGACAACACTATTGCTGGTACTATAAAAAATTAC
CAAGTTGCTTAATTTTTCTGTCTACAACTGATGTTTTAAAAGAATCCTTTCACTAACTTA
AGTGGTTGCCATTGAAGTGTTATTAAGAAGGAATATTAACCTCAGCAATCACTTTACAAC
AATCATGGAGAGACCTGTGTGCCTGCAGTTGGTGTTTGTTGCATTTCTGAGCCCACTTTG
TGTTCATCAGAAACAAAAGTATAATGGGAGAAATATTTTAAATAACCAGTATTTTAACTT
TTCATAAAGTTGGGACTTTAAAGTATCAACAAAGGATATTGAAATATATGTATTTTTACT
TTAGTCAAAACTACTTTTTATCTGATTTTTTAATTTTCTGTATTTGGAATCTTGTGAATT
AGAAATATCTATATCTACAGGTATATGGATATTTAAGACAATTGTAACAATAAATGTAAT
TCAGCAATGTGATTCAATTACATTTTATTTTCAGGATAAGATATGGTTTATTGTGTCAAA
TTTATATATTACCTTATATTGGTAAATGCTCTAAAAAGAATATTTAAGCTTCTTCAATTC
TATACCTCCTCTTTTCCCCAAGGACACACAAAAGAATGTGATCTAATATTAACCCTCTAT
GTGAATTTTGCCTTATCAAACATTGTGCCTTACTTTATTAAAAGTGTTTTGTTCAAATCT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               408-525, - strand, RNAz p=0.509822
               

               
               642-752, - strand, RNAz p=0.83261
               

               
               979-1098, + strand, RNAz p=0.831723

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               408-525, - strand, RNAz p=0.509822
               

               
               642-752, - strand, RNAz p=0.83261
               

               
               979-1098, + strand, RNAz p=0.831723

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-1653, gnl|bosTau2|chr1 (30598244-30596616)
               

               
               1-1653, gnl|Hg17|chr3 (121528225-121526454)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1653, gnl|bosTau2|chr1 (30598244-30596616)
               

               
               1-1653, gnl|Hg17|chr3 (121528225-121526454)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               ret (0.643666)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.643666)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	408-525, - strand, RNAz p=0.509822
	642-752, - strand, RNAz p=0.83261
	979-1098, + strand, RNAz p=0.831723

	1-1653, gnl\|bosTau2\|chr1 (30598244-30596616)
	1-1653, gnl\|Hg17\|chr3 (121528225-121526454)

	ret (0.643666)
	liv (0.292569)
	fce (0.271592)
	bla (0.248694)
	mgp (0.230681)
	nms (0.213858)
	cty (0.20816)
	fcc (0.197785)
	duo (0.172801)
	fco (0.157208)
	tbr (0.154178)
	ski (0.146735)
	spl (0.143184)
	kid (0.129735)
	thg (0.126791)
	ese (0.126502)
	cbl (0.114797)
	eje (0.0988338)
	ldo (0.0970026)