Non-Coding RNA Search

Ss1.1-Pig4-TMW8042M06.5

Sequence:


               
               GAAGGGCTGCCCAGGAAGCCTGAACCAAAGGCCACCCGGGCTCTGCACGTCTGGACTCAG
CCAGGAGCTGGGCCCCCAGAGGCTGACCTCCAAAAAAACCTTCCATACTCCAGGAGCGGG
TCCTCCTGGCTTTTTCCTTGGGCACCAGAGTACCTGGGGCCTGGGACAGTGGGTCTGAGC
CTGGCTCGGGTCTGTCACAGCCGGCCCGGCTCAGCTGGCTGCCTACCGCTGCTGCTACAG
CTCAACACACTGGACCTTCAAGTCCAGCCTGGATGCCTCCGATGTGATCTCTTTGTCCTT
CACCCTCCAGACAATGCCAAAGAGCCTACCCTTCCCCCGAGTCCCCCACCCCTTCCCAGC
TGGCCCCACCTCTGCCTGACAGCTGCCCCCAGCACAGATTGCTAGGCCTCAGCCTCGTGC
TGGCTGGAACCTTAGGAAGAAGGACCTGTGAGCAATTGAGTCACGGTGCTGGGGGCCAGG
CTGAAGGGCCAACCTGGATGCAGGATTTGGACAGATTAAATGTTGCTGGAGTACCTGTCC
TGGCATCTGTGCAGGGACCCCTGGCTGGGGTCCCAGAATGAGTGGCGTCTGCCCTAGGGT
CTCCTCCTTCCTTGGCCCCAACCTGTATCTTGGCTGGGAAGAGGAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGGCTGCCCAGGAAGCCTGAACCAAAGGCCACCCGGGCTCTGCACGTCTGGACTCAG
CCAGGAGCTGGGCCCCCAGAGGCTGACCTCCAAAAAAACCTTCCATACTCCAGGAGCGGG
TCCTCCTGGCTTTTTCCTTGGGCACCAGAGTACCTGGGGCCTGGGACAGTGGGTCTGAGC
CTGGCTCGGGTCTGTCACAGCCGGCCCGGCTCAGCTGGCTGCCTACCGCTGCTGCTACAG
CTCAACACACTGGACCTTCAAGTCCAGCCTGGATGCCTCCGATGTGATCTCTTTGTCCTT
CACCCTCCAGACAATGCCAAAGAGCCTACCCTTCCCCCGAGTCCCCCACCCCTTCCCAGC
TGGCCCCACCTCTGCCTGACAGCTGCCCCCAGCACAGATTGCTAGGCCTCAGCCTCGTGC
TGGCTGGAACCTTAGGAAGAAGGACCTGTGAGCAATTGAGTCACGGTGCTGGGGGCCAGG
CTGAAGGGCCAACCTGGATGCAGGATTTGGACAGATTAAATGTTGCTGGAGTACCTGTCC
TGGCATCTGTGCAGGGACCCCTGGCTGGGGTCCCAGAATGAGTGGCGTCTGCCCTAGGGT
CTCCTCCTTCCTTGGCCCCAACCTGTATCTTGGCTGGGAAGAGGAGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               94-579, - strand, RNAz p=0.999416

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               94-579, - strand, RNAz p=0.999416

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-579, gnl|bosTau2|chr19 (50910421-50909836)
               

               
               1-579, gnl|Hg17|chr17 (70612002-70612904)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-579, gnl|bosTau2|chr19 (50910421-50909836)
               

               
               1-579, gnl|Hg17|chr17 (70612002-70612904)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	1-579, gnl\|bosTau2\|chr19 (50910421-50909836)
	1-579, gnl\|Hg17\|chr17 (70612002-70612904)