Non-Coding RNA Search

Ss1.1-Pig4-TMW8042M16.5

Sequence:


               
               ATTTTTTTTATTACTCCAATGAATTGATCACATCTGTAGTTGCATAATGATGATCACAAT
CTGGTTTCACCGGATTCCCATCCCACAGCCCAAGCACGCGCCTGCAGTTGCATGGCGTGC
AGCGTTACAGGTTTTCCGTATTGGACTTTGCTTTGGTGCCTGAGAACCTTTCTGAACGCG
GTATGCAGTCTTACCTAGTTCTTGGCTCTGAACAGCTTCCCCACTTCCCAGAAAGCTTCC
AGGTCCTACGTCTCCCAAGAGAAATGCTGGCCCATCGCTTGGGTAGCCCCCTCTCCCGTG
TGGGGCTCTTGGCGCGACCTGGGGTTCGCCCTCTCTGGGCCGTGATTTCCTACCAGCAGT
GAGAATGTCTGGTCTCTCTGTAGGAATTCAGAGCTTCTGTAAGGACCTGGTGGAGGTGGC
CGACCTTCTGGAGAAGACTGCAGGGTGTGCTTCTGAAGAGGCCGAGCCTGGGGACCAGAA
GCTCGTTCTAGAGAAGATCTTCCGAGCGTTGTCGCTTCTGGAAGCAAAGCTGAAGAGTGT
GTTTGCCAAACACGGCCTGGAGAAGATGACCCCCCTTGGTGCCCAGTACGACCCGCACGA
GCACGAACTCATTTGTCACGTGCCCGCCGGCGCTGGGGTGCAGCCGGGCACCGTGGCACT
GGTGAGGCAAGATGGCTACAAACTTCACGGCCGCACCATTAGACTCGCCCGGGTAGAAGT
GGCCGTGGAGTCGCAGAGACGACTCTGAAGCTGCTCTCCCCGAGCACAGCCGCCTGGGAT
CCCTTTATTTATTTCCCGAGGTTTCTCTGGTACATGAGGTACTTCATGTGATCTGTTCTG
GATTTAGTCATATTGGCTTTATTTCTAAGATACTCTCTTGATTTCATGTGACCTGTTTGG
TCTCATCAGAAGTCTTGCCATTGGGCATTTGAACAGTGTGTGATAAGTGTTCCTGTGGCC
TTATCAAAATATGTTTAAGAAAATTATCTTAAAATTGGTACTCGGATGACTTCCAATCCA
AAATCTCTTCTAAAGGTGGAAATGAGTATATGTTTATGTACTTTCAACTAAACATTCCTT
CGAAGGGTCCCTGTAGCAGGACCTGTATAGGGCCTTGTGTTTGTAGGAAGAGGCGATGGT
GGGACTGGTTCATTATGTGGGTCCCGAAAGAGCAGGCTGCAGAGCTGGAGGAATTTAGAT
ATTTGGGTTGATTTTTATGCACACAGATTTTCAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTTTTATTACTCCAATGAATTGATCACATCTGTAGTTGCATAATGATGATCACAAT
CTGGTTTCACCGGATTCCCATCCCACAGCCCAAGCACGCGCCTGCAGTTGCATGGCGTGC
AGCGTTACAGGTTTTCCGTATTGGACTTTGCTTTGGTGCCTGAGAACCTTTCTGAACGCG
GTATGCAGTCTTACCTAGTTCTTGGCTCTGAACAGCTTCCCCACTTCCCAGAAAGCTTCC
AGGTCCTACGTCTCCCAAGAGAAATGCTGGCCCATCGCTTGGGTAGCCCCCTCTCCCGTG
TGGGGCTCTTGGCGCGACCTGGGGTTCGCCCTCTCTGGGCCGTGATTTCCTACCAGCAGT
GAGAATGTCTGGTCTCTCTGTAGGAATTCAGAGCTTCTGTAAGGACCTGGTGGAGGTGGC
CGACCTTCTGGAGAAGACTGCAGGGTGTGCTTCTGAAGAGGCCGAGCCTGGGGACCAGAA
GCTCGTTCTAGAGAAGATCTTCCGAGCGTTGTCGCTTCTGGAAGCAAAGCTGAAGAGTGT
GTTTGCCAAACACGGCCTGGAGAAGATGACCCCCCTTGGTGCCCAGTACGACCCGCACGA
GCACGAACTCATTTGTCACGTGCCCGCCGGCGCTGGGGTGCAGCCGGGCACCGTGGCACT
GGTGAGGCAAGATGGCTACAAACTTCACGGCCGCACCATTAGACTCGCCCGGGTAGAAGT
GGCCGTGGAGTCGCAGAGACGACTCTGAAGCTGCTCTCCCCGAGCACAGCCGCCTGGGAT
CCCTTTATTTATTTCCCGAGGTTTCTCTGGTACATGAGGTACTTCATGTGATCTGTTCTG
GATTTAGTCATATTGGCTTTATTTCTAAGATACTCTCTTGATTTCATGTGACCTGTTTGG
TCTCATCAGAAGTCTTGCCATTGGGCATTTGAACAGTGTGTGATAAGTGTTCCTGTGGCC
TTATCAAAATATGTTTAAGAAAATTATCTTAAAATTGGTACTCGGATGACTTCCAATCCA
AAATCTCTTCTAAAGGTGGAAATGAGTATATGTTTATGTACTTTCAACTAAACATTCCTT
CGAAGGGTCCCTGTAGCAGGACCTGTATAGGGCCTTGTGTTTGTAGGAAGAGGCGATGGT
GGGACTGGTTCATTATGTGGGTCCCGAAAGAGCAGGCTGCAGAGCTGGAGGAATTTAGAT
ATTTGGGTTGATTTTTATGCACACAGATTTTCAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57085761|ref|XP_546313.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57085761|ref|XP_546313.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               620-739, - strand, RNAz p=0.52427
               

               
               803-962, + strand, RNAz p=0.980517

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               620-739, - strand, RNAz p=0.52427
               

               
               803-962, + strand, RNAz p=0.980517

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_152407, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_152407, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               342-1234, gnl|bosTau2|chr7 (42201740-42200831)
               

               
               342-1234, gnl|Hg17|chr5 (148710631-148711513)
               

               
               342-1234, gnl|Mm7|chr18 (62105602-62104751)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               342-1234, gnl|bosTau2|chr7 (42201740-42200831)
               

               
               342-1234, gnl|Hg17|chr5 (148710631-148711513)
               

               
               342-1234, gnl|Mm7|chr18 (62105602-62104751)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               pla (0.267344)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               eru (0.120048)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               eru (0.120048)

	620-739, - strand, RNAz p=0.52427
	803-962, + strand, RNAz p=0.980517

	342-1234, gnl\|bosTau2\|chr7 (42201740-42200831)
	342-1234, gnl\|Hg17\|chr5 (148710631-148711513)
	342-1234, gnl\|Mm7\|chr18 (62105602-62104751)

	pla (0.267344)
	nlu (0.191681)
	nco (0.161734)
	cst (0.140036)
	eru (0.120048)