Non-Coding RNA Search

Ss1.1-Pig4-TMW8042N09.3

Sequence:


               
               TGCTGCAACAGCTGCCCCGCGCCGACCTGCTGCCGCGCTGGCGGAGCGCCGCCCCTGCTG
TGGTCGCGGCTGGCCAGGTGATTCCAAGAAAGATGGCAAAGAGAAGTTATGACTGTATGG
AAGATGAATTGGACTGCTATGACCTGAGTGGCAGTCGGAAGGCCTTCCTCATGTGTGTGC
AGAAGAACAGGCCAGGTGCTGAGCAAGATATCCAGTGGATGGAGGAATGGCTTGACCAGT
GCCATTTTGAACGTACATTGTGCATCGATCCCAACAAGATGGAGTTACTTGAAAAAATAA
GATCATTTCGTGATGGACTAAATGAAATTAAAGATGGCGTTGGCTGTTGCCTTGTTACTC
TTATGTCCCATGGAGAAGAAGGCTTTCTTAAAATGAACAATGGTGAAAAAGTCAGCCTGG
AAGGCATCTTTGAAATGTTTAACAATAAAAACTGTCCAGCACTTCAAGAGAAACCAAAAA
TCTTTATAATCCAGGCCTGCAGAGGAGAGAGAAGAGACATTGGTGTGGAAACGGATGATG
AACCCATGGACTCAGATGATGTATCTGAGAAGAGGCTGCCTACATTCAGTGATTATTTCA
TCATCTACCCCACCCGGGCAGCTCATGTTGCTTTACGGGACCCCCATACCGGCTCTGTGA
TGATCAGAGCAATGTCTAACGTCTCATGAATTTTAATTGTTACTGTGTTCTAACTTTTGG
TGTAACTCTAGACTGTATTTGGACCTGGGTGTCCTCATCTGTATAAAAGGAGACTTGGCT
CAGCAGATCCTGAGAGCTCATCGCACTGGACCTCAGTGAACTTTGACTTCTTAGTGAACT
CGCTCCTGAACACCCTCCAGAAATGGCTGTTCCTGAACCTTGGGAATCAAGCTGGCGGTT
GCATATGGCCTTTGGGCCTTTGTGAGGATGTAGGCATTTGGTGAAATACTCTGAAGATTG
AGAGCCAAATGGACTTCAGCAATCCAGAATCTCCAGCCCTGTCTCCATTTCAGGGATAAT
TATGTCCTTTTTAGTTAATTGTGGTTTCAAATATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGCAACAGCTGCCCCGCGCCGACCTGCTGCCGCGCTGGCGGAGCGCCGCCCCTGCTG
TGGTCGCGGCTGGCCAGGTGATTCCAAGAAAGATGGCAAAGAGAAGTTATGACTGTATGG
AAGATGAATTGGACTGCTATGACCTGAGTGGCAGTCGGAAGGCCTTCCTCATGTGTGTGC
AGAAGAACAGGCCAGGTGCTGAGCAAGATATCCAGTGGATGGAGGAATGGCTTGACCAGT
GCCATTTTGAACGTACATTGTGCATCGATCCCAACAAGATGGAGTTACTTGAAAAAATAA
GATCATTTCGTGATGGACTAAATGAAATTAAAGATGGCGTTGGCTGTTGCCTTGTTACTC
TTATGTCCCATGGAGAAGAAGGCTTTCTTAAAATGAACAATGGTGAAAAAGTCAGCCTGG
AAGGCATCTTTGAAATGTTTAACAATAAAAACTGTCCAGCACTTCAAGAGAAACCAAAAA
TCTTTATAATCCAGGCCTGCAGAGGAGAGAGAAGAGACATTGGTGTGGAAACGGATGATG
AACCCATGGACTCAGATGATGTATCTGAGAAGAGGCTGCCTACATTCAGTGATTATTTCA
TCATCTACCCCACCCGGGCAGCTCATGTTGCTTTACGGGACCCCCATACCGGCTCTGTGA
TGATCAGAGCAATGTCTAACGTCTCATGAATTTTAATTGTTACTGTGTTCTAACTTTTGG
TGTAACTCTAGACTGTATTTGGACCTGGGTGTCCTCATCTGTATAAAAGGAGACTTGGCT
CAGCAGATCCTGAGAGCTCATCGCACTGGACCTCAGTGAACTTTGACTTCTTAGTGAACT
CGCTCCTGAACACCCTCCAGAAATGGCTGTTCCTGAACCTTGGGAATCAAGCTGGCGGTT
GCATATGGCCTTTGGGCCTTTGTGAGGATGTAGGCATTTGGTGAAATACTCTGAAGATTG
AGAGCCAAATGGACTTCAGCAATCCAGAATCTCCAGCCCTGTCTCCATTTCAGGGATAAT
TATGTCCTTTTTAGTTAATTGTGGTTTCAAATATTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61872462|ref|XP_593808.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61872462|ref|XP_593808.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               320-507, + strand, RNAz p=0.994883
               

               
               863-981, + strand, RNAz p=0.873693

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               320-507, + strand, RNAz p=0.994883
               

               
               863-981, + strand, RNAz p=0.873693

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               281-507, gnl|bosTau2|chr22 (10060280-10060506)
               


               
               704-1051, gnl|bosTau2|chr22 (10067532-10067879)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               281-507, gnl|bosTau2|chr22 (10060280-10060506)
               


               
               704-1051, gnl|bosTau2|chr22 (10067532-10067879)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               sag (0.182715)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ese (0.126502)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ese (0.126502)

	320-507, + strand, RNAz p=0.994883
	863-981, + strand, RNAz p=0.873693

	281-507, gnl\|bosTau2\|chr22 (10060280-10060506)

	704-1051, gnl\|bosTau2\|chr22 (10067532-10067879)

	sag (0.182715)
	sin (0.174948)
	cut (0.169924)
	csk (0.140746)
	ova (0.129132)
	ese (0.126502)